Comments (1)
hsnguyen
commented on July 21, 2024
Hi Ahmed,
Thank you for your interest in our work.
jsa.np.barcode had originally been created for our own experiment and BC01 omitting was one of our settings before. But yes, it surely doesn't fit to the other use-case. You can find it fixed by pulling the newest commit of japsa and reinstall.
This module, although being useful for streaming analysis, yet has limited usage for inexperienced user. For that reason, we're trying to integrate it into jsa.np.npreader so that the demultiplexing can be established in a real-time fashion with the basecalling (just like Metrichor). Despite more tests are ongoing, we can say that it's very near to be released.
From newest git commit of Japsa, please try jsa.np.npreader -GUI to run on your base-called data and give us more feedback. Thank you!
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Related Issues (20)
- Resistance profiling Exception in thread "SSS" java.lang.NullPointerException HOT 1
- Release v1.7-05b - jsa.np.npreader HOT 1
- Feature request - use floats for base-call quality averages for jsa.np.filter params HOT 3
- npreader HOT 4
- problem with A dynamic, reusable donut chart for D3.js v4 HOT 4
- option illen doesn't work in capsim HOT 2
- Duplicated reads id issue HOT 1
- Refactor `consensusSequence()` HOT 2
- Species binning of fastq HOT 1
- VNTRTyper ArrayIndexOutOfBoundsException when handling BAM records with >65535 CIGAR operations HOT 2
- XM data corruption
- VNTR.xaf HOT 4
- Installation failed HOT 3
- identity rate in jsa.hts.errorAnalysis
- Understanding of jsa.np.rtSpeciesTyping output HOT 2
- NullPointerException XM compression HOT 2
- java.lang.OutOfMemoryError: Requested array size exceeds VM limit
- jsa.np.rtResistGenes - tmp folder not automatically generated, and _ao.fasta not produced when tmp folder made in advance HOT 1
- introducing new variable starting with word 'read' triggers ambiguity in japsa.util.CommandLine
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