meichenfang/covariance

Covariance

Datasets

1. Controls: pure RNA from Klein 2015
2. mRNA to check mRNA relationships: Klein + 10x
3. Protein + mRNA to check protein and cell mRNA: PBMC (CITE-seq & 10x)
4. Multiome to check ATAC and Nucleus mRNA: PBMC & HSCS
5. DOGMA-seq to check ATAC, protein and cell mRNA: PBMC

Name	Cells	Modality	Technology	Data
Klein_pure	pure RNA	cell mRNA	Indrops v1	GSM1599501
Klein_mESC	mESC	cell mRNA	Indrops v1	GSM1599494
10x_K562	K562	cell mRNA	10x Flex	10x
HSPC_2021	HSPC	ATAC + nucleus mRNA	10x multiome v1	GSM6403408
10x_pbmc_arc_3k	PBMC	ATAC + nucleus mRNA	10x multiome v1	10x
CITE-seq_2017	PBMC	cell mRNA + Protein	CITE-seq	GSE100866
10x_pbmc_protein_10k	PBMC	cell mRNA + Protein	10xv3	10x
10x_pbmc_protein_5k	PBMC	cell mRNA + Protein	10xv3	10x
DOGMA-seq_2022	PBMC	ATAC + cell mRNA + Protein	DOGMA-seq	GSE200417