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View Code? Open in Web Editor NEWVisualizing Association Rules and Frequent Itemsets with R
Home Page: http://mhahsler.github.io/arulesViz/
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wsgan001 xuezehao tylergiallanza vijaykrishnanmr mikhailry ewillyliew airysen thothal minghao2016 dsi-lab1 r-study-cxb anhmike bobcom firefly-cpparulesviz's Issues
manage errors in shiny part
Hi Michael Hahslern,
thank you for your efforts to make association rules algorithms available in R with rich visualization techniques.
I used Arules and ArulViz packages many times and as I developed many shiny apps for the research tasks I faced some errors in my shiny interfaces related to the error management methods in arulesviz package the first is when there are no rules for selected itemsets, it return a stop message like this (x contains 0 rules!) for user experience is not good to show this red error especially it appear like (error:x contains 0 rules!)
if(length(x)<1) stop("x contains 0 rules!")
Maybe it will be good if it appears like this
validate( need(length(x)>1, "x contains 0 rules!") )
or
if (length(x)<1) { "x contains 0 rules!" }
Data table contains several rows but none are displayed
Using ruleExplorer function the data table does not display any row.
ordering Y axis of paracoord plot
Hi..I want to order Y axis of paracoord plot of some rules in which lhs and rhs both have single item.
If I give reorder=TRUE then it is ordered automatically, but I want to order the itemsest in the y axis manually. Also I can't understand how it orders the itemsets on y axis when even reorder=FALSE.
I used the code to get the results in the image:
plot(rules, method = "paracoord",shading="confidence", control = list(main=paste("Rules in ", 1965, "_",1969,sep=""), col=rev(brewer.pal(9,"Purples"))))
I want to order the y axis in this format:
HERO PAIN TRNQ INHA ECST STIM HALU CRAC COCA MARI PCP METH SEDA LSD CIGA ALCO
Is there anyway to use arulesViz to visualize itemsets returned by opusminer?
Hello!
First of all, thank you so much for making arulesViz, it is a great package!
I know that I can use arulesViz to visualize itemsets returned by arules, but I'm wondering if I can make the same visualizations with itemsets returned by the opusminer package? From what I can see, opusminer returns list of itemsets quite similar in format to that returned by generatingItemsets(rules), but without the support parameter for each.
Thank you very much for any help!
hclust fails w/o minimum number of clusters
line
km <- cutree(hclust(dist(s_clust)), h=0)
fails with error
Error in hclust(dist(s_clust)) : must have n >= 2 objects to cluster
when a minimum number of rules are not available.
We run arules in an iterative script generating knitr reports and so sometimes the cut of the data simply isn't enough. Currently we just catch the error and fall back to inspect(rules), but it may make sense for the package to catch the error if there are less than 2 rules.
problems with Manjaro
Hi,
I failed to install arulesViz to my Manjaro OS.
There is failure info.
install.packages('arulesViz')
Installing package into ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘httpuv’, ‘shiny’, ‘later’, ‘crosstalk’, ‘promises’, ‘DT’, ‘plotly’
trying URL 'https://cran.rstudio.com/src/contrib/httpuv_1.4.5.tar.gz'
Content type 'application/x-gzip' length 1675895 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/src/contrib/shiny_1.1.0.tar.gz'
Content type 'application/x-gzip' length 2350156 bytes (2.2 MB)
downloaded 2.2 MB
trying URL 'https://cran.rstudio.com/src/contrib/later_0.7.3.tar.gz'
Content type 'application/x-gzip' length 38192 bytes (37 KB)
downloaded 37 KB
trying URL 'https://cran.rstudio.com/src/contrib/crosstalk_1.0.0.tar.gz'
Content type 'application/x-gzip' length 563474 bytes (550 KB)
downloaded 550 KB
trying URL 'https://cran.rstudio.com/src/contrib/promises_1.0.1.tar.gz'
Content type 'application/x-gzip' length 106866 bytes (104 KB)
downloaded 104 KB
trying URL 'https://cran.rstudio.com/src/contrib/DT_0.4.tar.gz'
Content type 'application/x-gzip' length 857807 bytes (837 KB)
downloaded 837 KB
trying URL 'https://cran.rstudio.com/src/contrib/plotly_4.8.0.tar.gz'
Content type 'application/x-gzip' length 1860673 bytes (1.8 MB)
downloaded 1.8 MB
trying URL 'https://cran.rstudio.com/src/contrib/arulesViz_1.3-1.tar.gz'
Content type 'application/x-gzip' length 782748 bytes (764 KB)
downloaded 764 KB
- installing source package ‘later’ ...
** package ‘later’ successfully unpacked and MD5 sums checked
** libs
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c RcppExports.cpp -o RcppExports.o
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c callback_registry.cpp -o callback_registry.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template T * get_pointer(std::auto_ptr const& p)
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:2:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:14,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/bind.hpp:26,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
gcc -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c init.c -o init.o
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c later.cpp -o later.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function/detail/prologue.hpp:18,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function.hpp:30,
from callback_registry.h:6,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template T * get_pointer(std::auto_ptr const& p)
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c later_native.cpp -o later_native.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function/detail/prologue.hpp:18,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function.hpp:30,
from callback_registry.h:6,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template T * get_pointer(std::auto_ptr const& p)
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_native.cpp:1:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c later_posix.cpp -o later_posix.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function/detail/prologue.hpp:18,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function.hpp:30,
from callback_registry.h:6,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template T * get_pointer(std::auto_ptr const& p)
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/bits/locale_conv.h:41,
from /usr/include/c++/8.2.0/locale:43,
from /usr/include/c++/8.2.0/iomanip:43,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/RcppCommon.h:52,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
later_posix.cpp: In function ‘void deInitialize()’:
later_posix.cpp:187:10: warning: ignoring return value of ‘ssize_t write(int, const void, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
write(dummy_pipe_in, "a", 1);
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c later_win32.cpp -o later_win32.o
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c timer_posix.cpp -o timer_posix.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/bind/mem_fn.hpp:25,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/mem_fn.hpp:22,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function/detail/prologue.hpp:18,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/function.hpp:30,
from timer_posix.h:7,
from timer_posix.cpp:6:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp: At global scope:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template T * get_pointer(std::auto_ptr const& p)
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c timestamp_unix.cpp -o timestamp_unix.o
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr & r ): pi( new sp_counted_impl_p( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr & r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr && r )
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
In file included from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’:
/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/8.2.0/memory:80,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/8.2.0/bits/unique_ptr.h:53:28: note: declared here
template class auto_ptr;
^~~~~~~~
g++ -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c timestamp_win32.cpp -o timestamp_win32.o
gcc -I"/usr/include/R/" -DNDEBUG -pthread -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I"/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/BH/include" -D_FORTIFY_SOURCE=2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -c tinycthread.c -o tinycthread.o
g++ -shared -L/usr/lib64/R/lib -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -o later.so RcppExports.o callback_registry.o init.o later.o later_native.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/usr/lib64/R/lib -lR
installing to /home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/later/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
sh: line 1: 1214 Aborted (core dumped) '/usr/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmprPyUaa/file4917b4aa623'
terminate called after throwing an instance of 'std::runtime_error'
what(): Mutex creation failed
ERROR: loading failed
- removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/later’
Warning in install.packages :
installation of package ‘later’ had non-zero exit status
ERROR: dependency ‘later’ is not available for package ‘promises’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/promises’
Warning in install.packages :
installation of package ‘promises’ had non-zero exit status
ERROR: dependencies ‘promises’, ‘later’ are not available for package ‘httpuv’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/httpuv’
Warning in install.packages :
installation of package ‘httpuv’ had non-zero exit status
ERROR: dependencies ‘httpuv’, ‘later’, ‘promises’ are not available for package ‘shiny’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/shiny’
Warning in install.packages :
installation of package ‘shiny’ had non-zero exit status
ERROR: dependency ‘shiny’ is not available for package ‘crosstalk’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/crosstalk’
Warning in install.packages :
installation of package ‘crosstalk’ had non-zero exit status
ERROR: dependency ‘crosstalk’ is not available for package ‘DT’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/DT’
Warning in install.packages :
installation of package ‘DT’ had non-zero exit status
ERROR: dependencies ‘crosstalk’, ‘promises’ are not available for package ‘plotly’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/plotly’
Warning in install.packages :
installation of package ‘plotly’ had non-zero exit status
ERROR: dependencies ‘DT’, ‘plotly’ are not available for package ‘arulesViz’ - removing ‘/home/yanboyang713/R/x86_64-pc-linux-gnu-library/3.5/arulesViz’
Warning in install.packages :
installation of package ‘arulesViz’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpwLXgnM/downloaded_packages’
Available methods limited to: ‘graph’, ‘paracoord’, ‘scatterplot’
I have installed version 1.3 but cannot use methods other than ‘graph’, ‘paracoord’, and ‘scatterplot’.
plot(fsets, method="matrix")
Error in plot.itemsets(fsets, method = "matrix") :
Unknown method: ‘matrix’
Available methods: ‘graph’, ‘paracoord’, ‘scatterplot’
System info:
R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
Wrong y-axis labels in paracoord plot
The following code generates a plot with wrong y-axis labels:
data <- as.data.frame(matrix(c(1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 0, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 0, 0, 1), nrow = 5, ncol = 6, byrow = TRUE))
names(data) <- c("Bread", "Milk", "Diapers", "Beer", "Eggs", "Cola")
data <- data.frame(apply(data, 2, function(x){as.factor(x)}))
rules <- apriori(data, parameter=list(supp=0.001,conf = 0.15, minlen = 2),
appearance = list(none = c("Beer=0", "Diapers=0", "Milk=0",
"Bread=0", "Eggs=0", "Cola=0")))
plot(rules[1:30], method="paracoord", control=list(reorder=TRUE))
The reason seems to be the argument: control=list(reorder=TRUE)) as it produces different plots with different seeds. Without the argument the y-labels are correct.
Set Color Limit
Is there a way to set a limit to the color grade?
Suppose that I have 1 rule with Lift 4 but all the other around 0.7 - 1.3. I would like to display the color grade in the range 0.7-1.3.
Error while loading package "arulesViz" in Rstudio
install.packages("arulesViz")
package ‘arulesViz’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\temp\Rtmpyueznq\downloaded_packages
library(arulesViz)
Error: package or namespace load failed for ‘arulesViz’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘caTools’
Warning in install.packages :
package ‘caTools’ is not available (for R version 3.5.3)
Already using updated version of RStudio Desktop .
Please solve my query.
Thanks
Use par settings, xlab&ylab
plot.rules should use the current values set by calls to the par function, e.g., bty and cex.
Also being able to specify xlab and ylab (if only to make the first letter upper case, to be consistent with other plots).
Issue when I install arulesViz through install.packages function
I already tried through Rstudio install the package but there I am having this error:
Installing package into ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘ggraph’ is not available
trying URL 'https://mhahsler.r-universe.dev/src/contrib/arulesViz_1.5-2.tar.gz'
Content type 'application/x-gzip' length 2009313 bytes (1.9 MB)
==================================================
downloaded 1.9 MB
ERROR: dependency ‘ggraph’ is not available for package ‘arulesViz’
* removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3/arulesViz’
Warning in install.packages :
installation of package ‘arulesViz’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpOvtmNv/downloaded_packages’
> library(arulesViz)
Error in library(arulesViz) : there is no package called ‘arulesViz’`
and in R terminal I am facing the following error:
> install.packages("arulesViz", repos = "https://mhahsler.r-universe.dev")
Installing package into ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3’
(as ‘lib’ is unspecified)
Warning: dependencies ‘ggraph’, ‘plotly’ are not available
trying URL 'https://mhahsler.r-universe.dev/src/contrib/arulesViz_1.5-2.tar.gz'
Content type 'application/x-gzip' length 2009313 bytes (1.9 MB)
==================================================
downloaded 1.9 MB
ERROR: dependencies ‘ggraph’, ‘plotly’ are not available for package ‘arulesViz’
* removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3/arulesViz’
The downloaded source packages are in
‘/tmp/RtmpubqfBo/downloaded_packages’
Warning message:
In install.packages("arulesViz", repos = "https://mhahsler.r-universe.dev") :
installation of package ‘arulesViz’ had non-zero exit status
> library("arulesViz")
Error in library("arulesViz") : there is no package called ‘arulesViz’
> install.packages("arulesViz")
Installing package into ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘curl’, ‘ggforce’, ‘httr’, ‘ggraph’, ‘plotly’
trying URL 'https://cloud.r-project.org/src/contrib/curl_5.0.1.tar.gz'
Content type 'application/x-gzip' length 714177 bytes (697 KB)
==================================================
downloaded 697 KB
trying URL 'https://cloud.r-project.org/src/contrib/ggforce_0.4.1.tar.gz'
Content type 'application/x-gzip' length 866336 bytes (846 KB)
==================================================
downloaded 846 KB
trying URL 'https://cloud.r-project.org/src/contrib/httr_1.4.6.tar.gz'
Content type 'application/x-gzip' length 157621 bytes (153 KB)
==================================================
downloaded 153 KB
trying URL 'https://cloud.r-project.org/src/contrib/ggraph_2.1.0.tar.gz'
Content type 'application/x-gzip' length 3172456 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
trying URL 'https://cloud.r-project.org/src/contrib/plotly_4.10.2.tar.gz'
Content type 'application/x-gzip' length 3902837 bytes (3.7 MB)
==================================================
downloaded 3.7 MB
trying URL 'https://cloud.r-project.org/src/contrib/arulesViz_1.5-2.tar.gz'
Content type 'application/x-gzip' length 1662138 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu
Using PKG_LIBS=-lcurl
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c callbacks.c -o callbacks.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c curl.c -o curl.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c download.c -o download.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c escape.c -o escape.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fetch.c -o fetch.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c form.c -o form.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getdate.c -o getdate.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c handle.c -o handle.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ieproxy.c -o ieproxy.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c interrupt.c -o interrupt.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi.c -o multi.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nslookup.c -o nslookup.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c reflist.c -o reflist.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ssl.c -o ssl.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c typechecking.c -o typechecking.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c winidn.c -o winidn.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-1upgAf/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c writer.c -o writer.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/usr/lib/R/lib -lR
installing to /home/victor/R/x86_64-pc-linux-gnu-library/4.3/00LOCK-curl/00new/curl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (curl)
ERROR: failed to lock directory ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3’ for modifying
Try removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3/00LOCK-ggforce’
* installing *source* package ‘httr’ ...
** package ‘httr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (httr)
ERROR: dependency ‘ggforce’ is not available for package ‘ggraph’
* removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3/ggraph’
* installing *source* package ‘plotly’ ...
** package ‘plotly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plotly)
ERROR: dependency ‘ggraph’ is not available for package ‘arulesViz’
* removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.3/arulesViz’
The downloaded source packages are in
‘/tmp/RtmpubqfBo/downloaded_packages’
Warning messages:
1: In install.packages("arulesViz") :
installation of package ‘ggforce’ had non-zero exit status
2: In install.packages("arulesViz") :
installation of package ‘ggraph’ had non-zero exit status
3: In install.packages("arulesViz") :
installation of package ‘arulesViz’ had non-zero exit status
And when I execute:
> library("arulesViz")
It returns me the following error:
Error in library("arulesViz") : there is no package called ‘arulesViz’
This is the first package which I am facing issue, I already tried to install ggforce and ggraph and I am facing the same thing with them, I already tried to install it through:
remotes::install_github("mhahsler/arulesViz", dependencies=TRUE)
install.packages('arulesViz', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))
And unfortunately, they lead me to the same issue again and again I am very stuck
graph_arules: quality attributes returned in igraph object are shifted by one row
Noticed when trying to export rules graph to graphml file,
here is some sample code from a script with explanations:
# - Load necessary libraries and other source files
library(arulesViz)
main = function(){
print("script_main::main")
# - load data
data(Income)
# - implement association rule analysis from loaded data "Income"
data_ap = apriori(Income, parameter=list(support=0.5, minlen=2))
inspect(data_ap)
# - plot network graph with plot() function of arulesViz package
# - and save as igraph class object
graph_by_igraph = plot(data_ap, method="graph", control=list(type="items", cex=0.6, alpha=1), margin=-0.1)
# - !!!!!!!! Here you can see the error :
# - when compared to the columns in the table of inspected rules,
# - all the values are shifted up exactly by one node, resulting in
# - the item node 48 "language in home=english" having rule quality attributes
# - and the last rule node r15 not having any quality attributes
print(vertex_attr(graph_by_igraph ))
print("exiting main")
}
main()
Is this still supported?
library("devtools")
install_github("mhahsler/arulesViz")
str(allPackage <- installed.packages(.Library, priority = "high"))
allPackage [, c(1,3:5)]
Loading required package: usethis
Downloading GitHub repo mhahsler/arulesViz@master
igraph (NA -> 1.2.4.2 ) [CRAN]
htmltools (0.3.6 -> 0.4.0 ) [CRAN]
htmlwidgets (1.3 -> 1.5.1 ) [CRAN]
shiny (1.3.2 -> 1.4.0 ) [CRAN]
fastmap (NA -> 1.0.1 ) [CRAN]
BH (NA -> 1.72.0-3) [CRAN]
Installing 6 packages: igraph, htmltools, htmlwidgets, shiny, fastmap, BH
Error: Failed to install 'arulesViz' from GitHub:
(converted from warning) installation of package ‘igraph’ had non-zero exit status
Traceback:
1. install_github("mhahsler/arulesViz")
2. install_remotes(remotes, auth_token = auth_token, host = host,
. dependencies = dependencies, upgrade = upgrade, force = force,
. quiet = quiet, build = build, build_opts = build_opts, build_manual = build_manual,
. build_vignettes = build_vignettes, repos = repos, type = type,
. ...)
3. tryCatch(res[[i]] <- install_remote(remotes[[i]], ...), error = function(e) {
. stop(remote_install_error(remotes[[i]], e))
. })
4. tryCatchList(expr, classes, parentenv, handlers)
5. tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. value[[3L]](cond)
In RStudio:
> library('arulesViz')
Error: package or namespace load failed for ‘arulesViz’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘caTools’
Unable to Load into R
Hello,
install.packages doesn't seem to load in all the required dependencies:
install.packages("arulesViz",dependencies = TRUE)
library(arulesViz)
throws error:
Loading required package: grid
Error: package or namespace load failed for ‘arulesViz’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘iterators’
I think some dependencies are missing, but I'm not too good at this yet:
if I manually install these: (grid, iterators, fpc), library(arulesViz) will no longer throw an error.
Thanks for your work and your time
Labels are missing in method graph with engine htmlWidget
Example:
library(arulesViz)
data(Groceries)
rules <- apriori(Groceries, parameter=list(support = 0.001, confidence = 0.8))
rules
subrules2 <- sample(subset(rules, lift > 5), 25)
# Default engine is ggplot2 with ggnetwork
plot(subrules2, method = "graph", engine = "htmlwidget")
Export to pdf for `method="matrix"` is blurry
png (perfect):
pdf (strange):
Is this intended?
Unused argument error with graph plot
When I try to plot rules with the graph method, I get the following error:
Warning: Error in hex: unused argument (alpha = 1)
Stack trace (innermost first):
109: sequential_hcl
108: grey_hcl
107: as.list
106: .get_parameters
105: graph_arules
104: plot.rules
103: plot
102: renderPlot
92: <reactive:plotObj>
81: plotObj
80: origRenderFunc
79: output$graphPlot
4: <Anonymous>
3: do.call
2: print.shiny.appobj
1: <Promise>
Warning in structure(NULL, class = "try-error", condition = cond)
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Or, in a simpler example
Error in hex(polarLUV(L = l[2] - diff(l) * rval^power[2], C = c[2] - diff(c) * :
unused argument (alpha = 1)
Other plot methods work fine. I use arules package 1.5-0 and arulesViz 1.2-0 in R Version 3.4.1 on an Ubuntu 14.04 machine. Does anyone have a solution?
Is there anyway to change the y-axis labels in a matrix-based plot?
I wan to show just a few rule consequents in the plot, so plotting the name of the itme would be great.
Is this possible? Thanks!
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