michaelghuang19/pancreatic-scripts

Various scripts for pancreatic cancer research

pancreatic-scripts

Various scripts for pancreatic ductal adenocarcinoma research

_utility: originally _scripts/_utility, contains various utility scripts for SPARK gene analysis, data processing, and other generic simulations

pvalues: originally GSE111672/ST/tsv/pvalues, processing and divvying up the adjusted p-value results from the GSE111672 data

significant: originally GSE111672/ST/tsv/significant, contains original significant p-value data that are then better presented in pvalues

plotting: new plotting scripts trying to manually annotate PDAC-A and PDAC-B data, as well as re-formatting and cleaning to present as model input

matlab: matlab-based analysis using the COBRA toolbox for gene analysis and mCADRE for model creation and analysis

Citations

Methods: SPARK (Paper)

mCADRE (Paper)

COBRA (Paper)

Data: GEO Link (Paper)