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Name: Eric Minwei Liu
Type: User
Company: Memorial Sloan Kettering Cancer Center
Bio: Postdoc at MSKCC studying cancer systems biology.
Location: New York City
Blog: https://ericmliu.com/
Name: Eric Minwei Liu
Type: User
Company: Memorial Sloan Kettering Cancer Center
Bio: Postdoc at MSKCC studying cancer systems biology.
Location: New York City
Blog: https://ericmliu.com/
scPred package for cell type prediction from scRNA-seq data
A list of scRNA-seq analysis tools
Information-based dimensionality reduction
A game theoretic approach to explain the output of any machine learning model.
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Pipeline for exploring metebolic heterogeneity at single-cell resolution
A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, custom visualizations, and group-wise analysis of tumor infiltrating immune cells using data from Ishizuka et al. Nature 2019.
SingleCellNet: classify single cells across species and platforms
Patch Collage Generator
Deep learning on histopathology images.
SynLethDB is a comprehensive database (and knowledgebase) for synthetic lethality, a promising strategy of cancer therapeutics and drug discovery
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
This repository contains demos I made with the Transformers library by HuggingFace.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.