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buencolors

R package of colors for the Buenrostro Lab

cancritls

ccmatch

R package for optimal matching of cases to controls using network flow theory.

chunkchromosome

Minor bugfix for ChunkChromosome. http://genome.sph.umich.edu/wiki/ChunkChromosome

corrplot

Package corrplot is for visualizing a correlation matrix

covid19-finemapping

cumulus

Cloud-based scalable and efficient single-cell genomics workflows

definetti

R package for plotting a de Finetti diagram and distributions of F-statistics of genotypes.

eas_partitioned_ldscore

Partitioned LD Scores for the EAS population

faststructure

A variational framework for inferring population structure from SNP genotype data.

finemapping-insights

Code for Kanai, M. et al. Insights from complex trait fine-mapping across diverse populations. (2021)

finemapping-pipeline

fujiplot

:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:

ggbio

Grid and ggplot2 based visualization for biological data

ggman

R package for plotting a manhattan plot using ggplot2.

ghq

Manage remote repository clones (Git or Mercurial)

gnomad_methods

Hail helper functions for gnomAD/MacArthur lab

gnome-terminal-colors-monokai

Monokai Gnome Terminal colors

grep

grimon

R package for plotting 3D graphical visualization of multi-omics data.

gwas_threshold_scripts

This repository contains the scripts used in Kanai, M. et al. (2016)

hail

Scalable genomic data analysis.

latextools

LaTeX plugin for Sublime Text 2 and 3

ldsc

LD Score Regression (LDSC)

ldsc-corrplot-rg

corrplot of LDSC genetic correlation results

ldsc-network-plot

Network representation of LDSC results

locusviz

Yet another locus visualization package in R

magentapy

Experimental port of MAGENTA software to Python.

meta-finemapping-simulation

minimac2

Minor bugfix for minimac2 http://genome.sph.umich.edu/wiki/Minimac2.