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followers: 144.0 following: 242.0 repos: 73.0 gists: 1.0

Name: Marcin Magnus

Type: User

Company: Harvard, USA

Bio: Computational structural RNA biologist at Harvard, USA

Twitter: marcinmagnus

Location: Cambridge, MA

Blog: http://mmagnus.github.io

🎓 Ph.D., Computational RNA biologist at Harvard University, USA

I'm trying to understand the evolution and role of RNA and RNPs in biological systems using computational methods (machine learning, molecular dynamics, structure prediction) and experimental (yeast genetics) and codify this knowledge into predictive computational models that can be applied for future RNA therapeutics.

https://mmagnus.github.io

Key papers:

Rearrangements within the U6 snRNA core at the transition between the two catalytic steps of splicing with Konarska @IMOL, Poland, 2019
RNA 3D Structure Prediction Using Multiple Sequence Alignment Information with Das and Bujnicki @ Stanford University, USA & IIMCB, Poland, 2019
RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools with the RNA-Puzzle Team @ IIMCB & IMOL, Poland, 2020 & the server https://rna-tools.online 2022
RNA 3D structure prediction using Deep learning, with Rivas, @Harvard, US, 2023-

RNA https://github.com/mmagnus?tab=repositories&q=rna&type=&language=&sort

Emacs https://github.com/mmagnus?tab=repositories&q=emacs&type=&language=&sort

See my projects @Github https://github.com/mmagnus?tab=repositories&q=&type=&language=&sort=stargazers

Marcin Magnus's Projects

awesome-rna-3d-tools

awesome tools for RNA

badges

The definitive rendering collection of badges

biopython

Official git repository for Biopython (originally converted from CVS)

boox-wifi-mount-sync

boox-wifi-mount-sync - sync or mount your Boox device over WiFi

borg-search

Tools search borg archives/repos (also to search big files to remove them)

centralized-workflow-exercise

curr_version

desirna

RNA sequence design software

diffpdb

diffpdb - a simple tool to compare text-content of PDB files

do-science-covid-faq

doctest-cmds

doctesting for cmds in Python doctests

emacs-env

I've been using Emacs for over 17 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/

emacs-grammarly

an Emacs extension to send a text to/from Grammarly

emacs-orgmode-tracking

emacs-pdb-mode

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

emacs-toggl

a simple plugin to work with toggl

emacsorgmodeclockingxbar

see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

engchecker2flycheck

english grammar cheker command line interfece (intended to use from emacs flycheck)

evoclustrna

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

flycheck-grammarly

Grammarly support for Flycheck.

fmalmeida

garmin2calendar

garmin2calendar - Send your Garmin activities to Calendar (on macOS)

garmin2orgmode

garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)

geekbook

G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes

geekbook-export

gnome-shell-simple-message

Write message on top bar with dconf

h2o-3

Open Source Fast Scalable Machine Learning API For Smarter Applications (Deep Learning, Gradient Boosting, Random Forest, Generalized Linear Modeling (Logistic Regression, Elastic Net), K-Means, PCA, Stacked Ensembles...)

h2o_utils

🔧 H2o utils: save/load models to your H2O session

hitrace

HiTRACE

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

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