mmichaelvdv/polystab

Individual-based modeling to study polyploid establishment

PolyStab: Individual-based modeling to study polyploid establishment from an eco-evo perspective

This repository contains an individual-based model and accompanying Pluto notebooks with toy simulations to study polyploid establishment from an integrated eco-evolutionary persepective.

Overview of the Pluto notebooks:

• unreduced_gametes.jl: Simulations with mixed-ploidy populations in a single deme
• AM.jl: Single deme simulations with assortative mating and/or selfing
• scaling_phenotype.jl: More in depth look at genotype-phenotype map
• gen_var.jl: Simulations of genetic variance in a single deme and different genotype-phenotype maps
• Env_stoch.jl: Changing environment through time in a single deme
• FToNS.jl: Testing some different model parameters in a single deme
• fixedpop.jl: Selection/Truncsel with constant population size
• truncation_selection.jl: Some experiments with truncation selection in a single deme
• island.jl: Implementation of island migration model
• island_estab_sims.jl: Simulations for polyploid establishment with island migration
• model_with_migration.jl: Original PnB simulations with haploid population
• linhab_gifs.jl: PnB type simulations with mixed ploidy populations in a linear habitat
• habitat2D.jl: Preliminary simulations in 2D habitat

Old code (might still contain some notes):

• matrix.jl
• migration_gifs.jl
• mixed_ploidy.jl
• single_deme_selection.jl
• single_deme.jl