Comments (2)
Hi Briana,
It seems like you're using an old version of ANGSD-wrapper. shared.pos.gz
was created when we used ngsPopGen for FST estimations. If you update to the latest version (run git pull
in the ANGSD-wrapper directory), we switch to ANGSD's FST estimations at the request of our reviewers. Updating to the latest version should solve this issue as well. We have kept ngsPopGen's FST available as an option as ANGSD's FST estimations are currently ungraphable with our Shiny Graphing application. With the latest version of ANGSD-wrapper, run git checkout ngsPopGen_Fst
in the ANGSD-wrapper directory.
TL;DNR update to the latest version of ANGSD-wrapper to fix this issue: git pull
Please let us know if you still have this issue, or have any other questions or comments!
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Hi, Paul et al.,
Thanks so much for your quick reply. I am such a newbie at git I was definitely not updated. I appreciate your help with a simple question like this one!
Thanks again,
Briana
On Nov 15, 2016, at 3:32 PM, Paul Hoffman [email protected] wrote:
Hi Briana,
It seems like you're using an old version of ANGSD-wrapper. shared.pos.gz was created when we used ngsPopGen https://github.com/mfumagalli/ngsPopGen for FST estimations. If you update to the latest version (run git pull in the ANGSD-wrapper directory), we switch to ANGSD's FST estimations at the request of our reviewers. Updating to the latest version should solve this issue as well. We have kept ngsPopGen's FST available as an option as ANGSD's FST estimations are currently ungraphable with our Shiny Graphing application. With the latest version of ANGSD-wrapper, run git checkout ngsPopGen_Fst in the ANGSD-wrapper directory.
TL;DNR update to the latest version of ANGSD-wrapper to fix this issue: git pull
Please let us know if you still have this issue, or have any other questions or comments!
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Related Issues (20)
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