mondale-tw/blasr

BLASR: The PacBio® long read aligner

#NEWS: refactored blasr has been put online. Please try it out!#

Blasr installation and maual:

$ more Manual.md

To pull this project from git hub to your local system:

$ git clone [email protected]:PacificBiosciences/blasr.git blasr --recursive

To sync your code with the latest git code base:

$ git pull -u origin master && git submodule update --init --recursive 

To specify HDF5 headers and lib on your system,

$ edit blasr_git_common.mk

or

$ export HDF5_INC=path_to_your_hdf5_include && export HDF5_LIB=path_to_your_hdf5_lib

To make 'blasr' only:

$ make blasr

To compile all tools, including blasr, pls2fasta, loadPusles, sawriter:

$ make 

To clean all compiled tools and lib:

$ make cleanall

To clean compiled tools without cleaning lib:

$ make clean