mosgeo/bpsmautotoolbox

This is the repository for the Stanford BPSM Automation Toolbox. The library can be used for creating and simulating basin and petroleum system models for studying probabilistic interactions.

bpsmautotoolbox's Issues

Lithology file XML Writer

Finish off the Lithology XML writer.

Displaying simulation output

In PetroMod.m, line 40 should be ~exist instead of exist I think

Read pmb files

If we want to read the output directly in matlab, we have to figure out the .pmb files. It is a binary format but we still do not know how to read it in matlab.

Output overlays number

A number/overlay dictionary is needed. This shouldn't be hard coded. It can be in a CSV file. Please keep track of the overlay numbers that you use so we can compile them.

Use strings instead of char type in Matlab

The whole library should use the new string type instead of char. This will make it future proof and provide better interface to users.

opensim output location

Right now, the demo script outputs are being stored in BPSM_PMToolbox directory. It gets overwritten if you're iterating. I changed the directory to model directory in main file for now, but this can be changed in PetroMod.m

Lithology and Curve Class Abstraction

Lithology and Curve classes are not abstracted using title lists. It should be done to minimize work when upgrading to new versions of the file.

PM Project management

Create a Project class to manage the project. Initial features will be

• Duplicate models.

• Run models.

Simplify modification of 1D main table

Right now, the main table is modifiable using the normal procedure of modifying any table. Because this table is complicated and is really important, a more simpler method should be used for modification by creating a customized function.

An idea of the function would be an input structure with possible changes to the table. The table would modify only those parameters automatically. Details need to be figured out. Suggestions welcomed.

PetroMod Id in new Lithology

new added lithology should have unique PetroMod Id.

Update model not really updating the model

Anisotropy Factor Thermal Conductivity

Anisotropy Factor Thermal Conductivity is not mixed correctly when using the layerd rock model.

PMD Group writing issue with PMT

The PMT file extension for the is wrong. It is currently pmdGroup. Need fixing in Model2D.

Model dimensions should be determined automatically

Right now, nDim is needed for to determine where the model is located in the project directory. How about having the code search in all directories and just finds the right model automatically.

Assertions

Include assertions (in main functions at least) to catch user errors and inform the user about the wrong inputs.

Id and MD5 Tests

Perform Id tests:

1. Check if MD5 is used.
2. Test if any MD5 Hash can be used.
3. Write helper function for generating new IDs and make sure it doesn't exist in the project.

Error writing tables