mpieva/network-aware-bwa

the Burrows Wheeler Aligner with networking capabilities

network-aware-bwa's Issues

undefined references for several functions

Hello, I ran into some problems with undefined references when trying to compile this program. I repaired them in a haphazard manner locally by removing a couple of the "inline" annotations, but wanted to let you know and hopefully make sure I wasn't breaking anything!

bwtaln.o: In function bwt_cal_width': /usr/Programs/bwa_bam2bam/network-aware-bwa-master/bwtaln.c:61: undefined reference to bwt_2occ'
bwtgap.o: In function bwt_match_gap': /usr/Programs/bwa_bam2bam/network-aware-bwa-master/bwtgap.c:202: undefined reference to bwt_2occ4'
bwtsw2_core.o: In function bsw2_connectivity': /usr/Programs/bwa_bam2bam/network-aware-bwa-master/bwtsw2_core.c:104: undefined reference to bwtl_2occ4'
bwtsw2_core.o: In function bsw2_core': /usr/Programs/bwa_bam2bam/network-aware-bwa-master/bwtsw2_core.c:476: undefined reference to bwtl_2occ4'
/usr/Programs/bwa_bam2bam/network-aware-bwa-master/bwtsw2_core.c:529: undefined reference to `bwt_2occ4'
collect2: error: ld returned 1 exit status
make: *** [bwa] Error 1