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smile

Go implementation of SMILE

smile-commons

Centralized configurations for checkstyle plugin and dependency management.

smile-consistency-checker

Consistency checking library for CMO MetaDB

smile-cpt-gateway

smile-dashboard

smile-dremio-gateway

smile-graphql-client

smile-irt-publisher

smile-label-generator

SMILE messaging service for handling CMO label generation

smile-message-publisher

Spring Boot LIMS SampleMetadata publisher framework

smile-message-publisher-go

smile-messaging-java

CMO Messaging Library

smile-request-filter

CMO MetaDB Request Filter app

smile-server

smile_types

tableau-dashboard-ppbc-data-visiualization

tempo

CCS research pipeline to process WES and WGS TN pairs

temposig

Fitting mutational catalog to signatures with maximum likelihood

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

toil-elk

Template for running Toil on LSF HPC with ELK stack logging

triassic

Containers to faciliate the running of old (pre-disaster) JUNO scripts

twig-lint

Standalone twig linter.

variant-overlap

variant_launch_validation

a legacy project to validate m/p/g files

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vcf2tsv

a tool that takes the output files of different callers and creates maf-like, row-based output

vcf_accuracy

vcf accuracy evaluator using VT, BEDTOOLS, PyVCF, and TABIX

velox-plugin

Plugins for LIMS

voyager-operation-dashboard

Dashboard to facilitate voyager operations

voyager-utils