mvonpapen/lfp_matlab

Scripts and functions for LFP analyses with Matlab

Projects:

• Analyses of apomorphine effects (involving phase coherence classification (PCC))
• Analyses of tremor patients (involving Granger causality (GC))
• Resting state network (RSN) analyses of M/EEG (data example in ./matlab/brainstorm3/rs_BayHan1_v0.mat)

Folder structure:

• ARCHIVE: results and scripts that were deemed to be archive-worthy, incl. a backup_file
• DATA: data
• cheops: scripts and data taken from cheops, GC of tremor and restng state network analyses
• matlab_afs: scripts from neuro-project's afs folder. these scripts were tested and work well
• matlab: large folder containing everything
  • AnalysisApoPatients: pics and results for some patients
  • brainstorm3: brainstorm related content for RSN AnalysisApoPatients
  • Brown2015: scripts to show that Brown2015 results may only show noise correlation
  • Grangwer: scripts and results of GC tremor patient analysis
    • Granger_Detteo: scripts from Detteo et al publication
    • pics: results
    • Tutorial: tutorial from Benjamin Mille
  • moved_to_afs: functions that have been taken out of matlab path, because they have been copied to matlab_afs
  • RSN: scripts and results of RSN analyses
  • shadedErrorBar: shadedErrorBar function
  • temp: temporary stuff
  • Test_pahe_thresh: scripts and data used to calculate phase/time/freq. resolution
  • toolbox: scripts from specific toolboxes that were at the moment not available and thus copied from web

Most important scripts and mat-files:

• calc_coherence_par.m: calculates coherence from data files (in matlab)
• calc_pow_v2.m: invoked by former, does the real calculation (in matlab)
• data_[task]_v3.mat: latest data files (in matlab)
• load_dat_from_DATA.m: loads data from raw files (in matalab_afs)

Authors: Michael von Papen, Felix Gerick, Benjamin Mille Date: 02.08.2017