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deephpms

Deep Hidden Physics Models: Deep Learning of Nonlinear Partial Differential Equations

deepviv

Deep Learning of Vortex Induced Vibrations

deformable

Deformable shape module with focus on neonatal cortex reconstruction.

denseinferencewrapper

A python wrapper for Krähenbühls dense CRF for medical image volumes.

dicom2fem

Generation of finite element meshes using computed tomography scans

dicomtomesh

A command line tool to transform a DICOM volume into a 3d surface mesh (obj or stl). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning.

diffusion_tensor_visualization_vtk

dmdpack

Dynamic Mode Decomposition

drug_diffusion

Finite differences model of temporal drug diffusion in a multilayered arterial wall.

dugksfoam

An OpenFOAM solver for Boltzmann model equation using discrete unified gas kinetic scheme

eigensolver_gpu

GPU Eigensolver for symmetric/hermitian matrices.

emopt

A suite of tools for optimizing the shape and topology of electromagnetic structures.

engrafo

Converts LaTeX documents into beautiful responsive web pages.

erpel

a voxel-based finite-element code to compute elastic moduli of porous structures

espresso

The ESPResSo package

espressopp

Main ESPResSo++ repository

eunomia

Muscle simulation Thesis

ewaldsummation

Ewald summation program for computing the long range Coulomb interactions in 3D Periodic systems

exact-discrete-geometry-processing

Implementation of Robust geometrical predicate, arbitrary arithmetic types, to work toward a robust Voronoi/delaunay implementation for ITK

ezyrb

Easy Reduced Basis method

fabsim

Fabric-based automation toolkit for Scientific Simulations

feature-surface

Detect featured surfaces of unstructured meshed.

feconv

Program feconv is an utility to convert between several mesh and FE field formats, like ANSYS mesh files (.msh), MD Nastran input files (.bdf), I-Deas Universal (.unv), VTK files (.vtk), etc. If you use a Modulef format to store an intermediate mesh (.mfm). It can transform the FE type of a mesh composed of trangles or tetrahedra, to Lagrange P1 or P2, Raviart-Thomas (face) or Whitney (edge) finite elements. It also uses third-party code to perform bandwidth optimization (CutlHill-McKee optimization).

fem-shell

FEM Code for Fluid-Structure Coupling - Structure Solver implementing Flat Shell Elements

fenics_learning

fft-python

FFT Examples in Python

flines

plot 3d streamlines in vtk files

fourflow

Open Source software for quantification and visualization of time-resolved three-directional phase contrast magnetic resonance velocity mapping

fpsi-bloodflow-ale

modeling non-Newtonian fluid-structure interaction for arterial flow with ALE (moving domains)

freecad_convert

A python script that uses FreeCAD to convert files like .stp, .stl, .igs, ...