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License: GNU General Public License v3.0
Compliance tester and test cases for Beacons.
License: GNU General Public License v3.0
Provide examples of
Tests should not be hard coded in test_counts.py
etc. but moved to configuration files (....yaml
).
After the latest update, got the following errors.
When revert to the last version, the error goes away.
$ python beacon_api_tester.py --host sv
INFO: Running api tests...
Traceback (most recent call last):
File "beacon_api_tester.py", line 85, in <module>
utils.setup.Settings().set_args(c_args)
File "/Users/gaobo/Desktop/projects/Beacon_Test/beacon-api-tests/utils/setup.py", line 72, in set_args
for pathname in c_args.test:
TypeError: 'NoneType' object is not iterable
The current test data only includes breakpoint rearrangements, the DUP and DEL cases are not included. We would like to also have these test cases for our copy number beacon.
Copy number variants are imprecise DUP/DEL of a large span (usually kbs and mbs). A good example of DUP/DEL in VCF can found on page 11 in the VCF specification (https://samtools.github.io/hts-specs/VCFv4.2.pdf).
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