Comments (2)
There is a phase problem.
You can check your files:
awk '{if($3 == "CDS" && ($8 != 0 && $8 != 1 && $8 != 2)) print $8}' file
It must be 0,1 or 2 (only for CDS).
I will update the code to throw a proper warning and set it to 0 by default.
from emblmygff3.
Ha, I see! Many thanks for the help! :-)
Best,
Jia-Xing
from emblmygff3.
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