Giter Site home page Giter Site logo

Comments (3)

Juke34 avatar Juke34 commented on August 28, 2024

Please see the README:
https://github.com/NBISweden/EMBLmyGFF3#parameters
or the code:

parser.add_argument("-a", "--accession", default=None, action="store_true", help="Bolean. Accession number(s) for the entry. Default value: XXX. The proper value is automatically filled up by ENA during the submission by a unique accession number they will assign. The accession number is used to set up the AC line and the first token of the ID line as well. Please visit [this page](https://www.ebi.ac.uk/ena/submit/accession-number-formats) and [this one](https://www.ebi.ac.uk/ena/submit/sequence-submission) to learn more about it. Activating the option will set the Accession number with the fasta sequence identifier.")

It is a boolean, False by default putting -a will become true. No need to give any value

from emblmygff3.

Juke34 avatar Juke34 commented on August 28, 2024

Thank you for the feedback.
I have PR a fix to RATT-with-GFF. Let see if the owner is stll active on this project.

from emblmygff3.

CEPHAS-01 avatar CEPHAS-01 commented on August 28, 2024

Please see the README: https://github.com/NBISweden/EMBLmyGFF3#parameters or the code:

parser.add_argument("-a", "--accession", default=None, action="store_true", help="Bolean. Accession number(s) for the entry. Default value: XXX. The proper value is automatically filled up by ENA during the submission by a unique accession number they will assign. The accession number is used to set up the AC line and the first token of the ID line as well. Please visit [this page](https://www.ebi.ac.uk/ena/submit/accession-number-formats) and [this one](https://www.ebi.ac.uk/ena/submit/sequence-submission) to learn more about it. Activating the option will set the Accession number with the fasta sequence identifier.")

It is a boolean, False by default putting -a will become true. No need to give any value

I think it is confusing in the documentation to state that the data type is Boolean when indeed there is no value to be supplied. Anyone with experience with other documentation files will naturally supply a boolean argument to that parameter. I wasted so much time on this aspect. I think it would be better understood if it stated explicitly that no value is to be supplied, rather setting the parameter or otherwise is sufficient

from emblmygff3.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.