Comments (1)
We checked the issue and our usage seems to be fine.
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Related Issues (20)
- [BUG] PGAP fails install when running on singularity. HOT 2
- [BUG] When two input genomes have same basename, the first genome is mistakenly used for the second run. HOT 3
- [FEATURE REQUEST] direct S3 access to input datasets HOT 5
- Running PGAP with Metagenomic Assembled Genome HOT 11
- [BUG] PGAP analysis generates all files except .aa and .gbk HOT 35
- [FEATURE REQUEST] Unable to retrieve additional reference data from https://s3.amazonaws.com/pgap/input-[version].tgz. HOT 2
- Problem with running pgap annotation HOT 1
- [FEATURE REQUEST] Any plans about EGAP (Eukaryotic Genome Annotation Pipeline)? HOT 2
- [FEATURE REQUEST] <Turn Off GO annotation> HOT 7
- [BUG] Binding non-existent file HOT 6
- [BUG] <title>The length of the gene exceeds the length of the conitg HOT 10
- PIPELINE TEST w/ M. genitalium - PermissionError: [Errno 13] Permission denied: '/pgap/output/debug/tmpdir HOT 38
- [BUG] <title>How to run pgap.py with qsub file. HOT 5
- [BUG] WARNING Final process status is permanentFail HOT 9
- [FEATURE REQUEST] Quit if no SSE4.2 support is detected HOT 6
- [BUG] checkm dies with "OSError: AF_UNIX path too long" HOT 5
- [FEATURE REQUEST] Workaround for "taskset: failed to set pid 0's affinity"-Bug HOT 2
- [BUG] Failing to run my own sequence HOT 19
- [FEATURE REQUEST] Support for Charlie Cloud Docker compatible (but more secure) container system for HPC HOT 1
- pgap --update showing huge file size during installation HOT 19
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