Comments (3)
Hi, sorted BAM file by chromosomic coordinates is required. The index no.
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Is it throwing an error if not ?
from tpmcalculator.
No, it is not.
In principle, the sorted BAM file will be used only for improving performance as you will be processing the same chromosome. If it is not sorted, then the program will be changing chromosome pointers every time you process a read.
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Related Issues (20)
- Output read counts file?
- Different results based on seq. depth HOT 4
- TPMCalculater, the output files are empty HOT 10
- Gene number in input GTF differs from the TPMCalculator output HOT 3
- symbol lookup error HOT 9
- Sets the name of the output HOT 2
- Add a new option to use a directory as output destination HOT 1
- For the paired end reads, is it recommended to use option -p or should i go with default without it? HOT 1
- Output file description HOT 2
- /usr/bin/ld: cannot find -lbamtools HOT 2
- *_genes.out duplicate genes HOT 3
- Compilation error: collect2: error: ld returned 1 exit status HOT 2
- Is the read counting strand-specific? HOT 2
- Key ID for gene name was not found on GTF line HOT 3
- No TPM values, no reads processed HOT 9
- Chromosome with name: ENST.... does not exist HOT 10
- Output files desctiption HOT 1
- Installation without docker HOT 1
- Meaning of "UniqueReads" in genes.out file? HOT 2
- Possible to use gff3 in TPMCalculator v 0.4? HOT 1
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