neoneuron/minfo

Mutual information estimator with adaptive partitioning algorithm (C++/OpenMP accelerated).

Hi there 👋

I'm Kai Chen 🇨🇳 !

🧠 I love studying brain.

🖥 I love studying artificial computing systems.

🧑🏻‍💻 I love coding and fancy geek tools.

😆 I hope to interact with the world through interesting projects.

minfo's Issues

Add required python version to readme

Took trial and error to install this package. Should add the Python version that this package was built for in the readme.

For anybody that comes across this, Python 3.7 is what worked for me.

omp_get_thread_num

Hello, I've been using your software to estimate mutual information for a while now, and suddenly I keep running into these issue. Would you know what to make of the following ?

This happens when I try importing the library in my python scripts:

File "/home/lionel/miniconda3/envs/perso/lib/python3.8/site-packages/minfo/init.py", line 3, in
from . import mi_float # dynamic lib must be imported after some other modules

ImportError: /home/lionel/miniconda3/envs/perso/lib/python3.8/site-packages/minfo/mi_float.cpython-38-x86_64-linux-gnu.so: undefined symbol: omp_get_thread_num

Any help is greatly appreciated.

ImportError: undefined symbol: omp_get_thread_num

Environment:

• Python==3.7.11

Dependency:

• Numpy==1.21.2
• Cython==0.29.24

Issue content:

Error occurs when running example/example.py

ImportError: /home/kchen/mutual_information/minfo/mi_float.cpython-37m-x86_64-linux-gnu.so: undefined symbol: omp_get_thread_num

What is "mi_c" file in "mi_float.py"?