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anamorph

Framework for creating 3d neuronal morphologies from point/diameter descriptions.

app_crackgenerator

The CrackGenerator ug4 app.

app_neurolucida

Application for the Neurolucida ug4 Plugin (Backend)

app_skinlayergenerator

Generate skin layer volume meshes

biofilm

build_tools

contains some utility for building NeuroBox (for developers)

cable_neuron

UG4 plugin providing functionality for cable equation simulations on "1d" neurons

cable_neuron_app

UG4 app providing Lua scripts for cable equation simulations on "1d" neurons

calciumdynamics_app

UG4 app providing Lua scripts for calcium dynamics simulations on neurons

calcsim

Matlab-based code for simulating detailed calcium dynamics in neurons, using reconstructed neuron morphologies

electricalmodelingscripts

Contains a collection of scripts for a quantitative comparison of various models for electrical signal processing in neurons

electro_diffusion

UG4 plugin for simulation of Poisson-Nernst-Planck problems

membranepotentialmapping

UG4 plugin for membrane potential mapping from 1d Neuron simulations to 3d

membranepotentialmapping_app

Example usage for the MembranePotentialMapping plugin

neugen

NeuGen is made for generation of dendritic and axonal morphology of realistic neurons and networks in 3D

neuro_collection

UG4 plugin for unified neuro-related functionality

neurobox-packages

Neurobox packages for UG4

neurobox3d

neurobox3d.github.io

The Neurobox website

neuromorpho

Making use of the REST API (NeuroMorpho.org v7) to query the database

plugin_crackgenerator

The CrackGenerator ug4 plugin

plugin_neurolucida

Neurolucida ug4 plugin (Backend)

plugin_skinlayergenerator

Generates volume meshes of vertical columns of skin layers:

promeshscripts

Scripts for ProMesh

scripts

A small collection of auxiliary scripts for NeuroBox

tetgen143

TetGen v1.4.3 source

vrl-density-vis

Density Visualization Plugin for VRL

vrl-dnmj-plugin

vrl-neurobox-plugin

VRL-NeuroBox-Plugin is the plugin for detailed simulations in Neuroscience.

vrl-neurolucida-project

VRL-Neurolucida-Project for VRL-Studio (Frontend)