neurobox3d/anamorph

Framework for creating 3d neuronal morphologies from point/diameter descriptions.

anamorph's Issues

am_cellgen: command not found

After cmake .. and make, I got the reslult:

[100%] Built target am_meshstat```
But, when I try to run ```am_cellgen -i L-glu-8-31-16-b0023-image.CNG.swc```, it says: am_cellgen: command not found.
What's the possible cause of this situation

Add Travis support

Potential wrong template usage

In Cellnetwork_impl.hh in lines 4942 and 4994 the following statements seem wrong:

v_it->template getOutEdges(tmp_edges).

It should probably read as:
v_it->getOutEdges(tmp_edges);.

This will prevent from building on OSX Catalina with MacOSX10.15.sdk Commandline tools (Clang 11?).

Add AppVeyor CI

Potential memory leak

It seems IsecInfo needs a virtual dtor, because there are pure virtual member functions included.
Calling delete on a base class pointer will result in a memory leak.

SLOC 472 in file NLM_CellNetwork.hh.

SWC file without soma points throws

Processing a simple SWC file like the following

1 2 0 0 0 6 -1
2 2 10 0 0 2 1
3 2 20 0 0 2 2
4 2 30 0 0 2 3

fails with

ERROR: Caught string exception at top level. message: "CellNetworkIterator::operator->(): down-casting to value type failed. internal logic error."

Changing the structure identifier of the first line to 1 (soma) makes it work.

The code should also work without a soma attached to the geometry.
At least, however, the error should hint to the cause of the problem.