Problem with DUMPSOFTWAREVERSIONS

[VasylVaskivskyi]

Problem with DUMPSOFTWAREVERSIONS

[jfy133]

Thank you for the bug report and the identification of the problem. That is very strange why that has not come up before... I'm currently travelling but will look into it when back next week..

[jfy133]

Hi @VasylVaskivskyi

Thank you very much for the bug report file in particular.

I am unable to recreate the issue you are encountering. Re-running your command (with the test data) I get a correctly formatted YML file with PROKKA in the right place.

I find the error doubly strange as the rest of your YML is correctly formatted, and the PROKKA module itself also is correct.

I see you're resume'ing, did you happen to try modify or edit the file in the work` directory yourself?

But as I can't replicate the error, and the code looks OK, I will close this for now.

You could also try running your command as above but with the -profile test,singularity profile and without your data, and see if the same thing happens in that run too (this would at least suggest there is something more systematic).