Comments (6)
tthyer
commented on May 27, 2024
3
+1 I also encountered this error
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apeltzer
commented on May 27, 2024
1
The DSLv2 rewrite is almost ready -- please have a look at the dsl2 branch of this pipeline that should cover a large portion of the pipeline updates and also ffix this 👍🏻
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apeltzer
commented on May 27, 2024
It should - I fear I have to really sit down with this pipeline a couple of times more to fix some of the issues we have. Currently quite swamped with other things unfortunately, so if someone wants to have a go :-)
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joefranchesco
commented on May 27, 2024
I'm also running into this.
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chaochungkuo
commented on May 27, 2024
Same here.
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apeltzer
commented on May 27, 2024
Fixed in dev
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Related Issues (20)
- Autorenaming of files in new cellranger module leads to erroneous renaming of sample ID containing R1 in it, like in SRR ids HOT 2
- Multi-omics support (meta-issue) HOT 1
- exceeded running time limit (8h) HOT 3
- Crash when specifying existing --star_index using star aligner HOT 2
- Bump up kb to 0.28.0 HOT 3
- Use nf-validation plugin HOT 1
- Update or remove universc HOT 8
- Tests for cellranger-arc HOT 1
- MuData conversion
- Utilize central modules for simpleaf workflow HOT 1
- The cellrangerarc cannot start successfully HOT 2
- When aligner is cellrangerarc the step MTX_TO_SEURAT failed HOT 3
- Avoid error on unknown headers in input.csv HOT 4
- Issues with samplesheet.csv as well as additional columns in the samplesheet HOT 3
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 3
- allow use of .gz when specifying fast and gtf HOT 4
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