Related Issues (20)
- Empty files were also published from the module samtools/fastq
- kaiju2table not reporting taxon names
- Generate samplesheet for nf-core/mag HOT 4
- Logo does not match the logo in tube HOT 1
- Move/copy DB troubleshooting content from Usage/Tutorial to Usage/ or new Usage/Database-troubleshooting HOT 1
- Failed to produce kaiju_combined_reports.txt HOT 4
- Current UNTAR scheme inefficent and can cause overwriting for database sheet input HOT 1
- KrakenUniq read extraction HOT 4
- Database parameter validation for bracken doesn't work currently
- taxprofiler krona output files missing HOT 1
- Recommended procedure for profiling nanopore data HOT 1
- The run_accession and sample_name should be unique.
- Add example in documentation for multiple runs of the same sample
- No logo in multiqc report HOT 1
- Add support Metabuli.
- Merged tables not produced if not run with --run_profile_standardisation HOT 1
- Add support for the sylph profiler
- Update nonpareil to allow gzip input HOT 3
- Add a long read classifier: lemur
- Add CAT/BAT/RAT for long reads
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