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UPGMA clustering of constructing phylogenetic relationships implemented from scratch

License: MIT License

Python 100.00%
upgma upgma-algorithm upgma-clustering phylogenetics phylogenetic-trees

upgma's Introduction

UPGMA

UPGMA clustering of constructing phylogenetic relationships implemented from scratch

About

Implementation of UPGMA clustering algorithms for given nucleotide and protien alignments.

Running

python s11.py
python s12.py
python s21.py
python s22.py

Score calculation

Further details about the implementation can be found out at A2_Bio.pdf

Libraries used

Numpy Pandas

Contributors

Karthik Viswanathan

upgma's People

Contributors

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Watchers

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Forkers

jvarela10

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