In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkLightObject.h:21:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkDataObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleProcrustesRegistration.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleProcrustesRegistration.cxx:15:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:121:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleDomain.h:109:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:132:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:498:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleAttribute.h:22:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleProcrustesRegistration.h:21,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleProcrustesRegistration.cxx:15:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h: In copy constructor ‘itk::ParticleEventWithIndex::ParticleEventWithIndex(const itk::ParticleEventWithIndex&)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:75:3: warning: base class ‘class itk::ParticleEvent’ should be explicitly initialized in the copy constructor [-Wextra]
ParticleEventWithIndex(const ParticleEventWithIndex &v)
^
[2/7] Building CXX object ITKParticleSystem/CMakeFiles/ITKParticleSystem.dir/itkParticleSystem.cxx.o
FAILED: ITKParticleSystem/CMakeFiles/ITKParticleSystem.dir/itkParticleSystem.cxx.o
/usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -IITKIOFactoryRegistration -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11 -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/Utilities -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/tinyxml -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -msse2 -msse2 -O2 -g -DNDEBUG -MD -MT ITKParticleSystem/CMakeFiles/ITKParticleSystem.dir/itkParticleSystem.cxx.o -MF ITKParticleSystem/CMakeFiles/ITKParticleSystem.dir/itkParticleSystem.cxx.o.d -o ITKParticleSystem/CMakeFiles/ITKParticleSystem.dir/itkParticleSystem.cxx.o -c /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.cxx
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkLightObject.h:21:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkDataObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.cxx:15:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:121:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleDomain.h:109:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:132:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkMacro.h:587:27: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#define ITK_TEMPLATE_TXX "error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:498:5: note: in expansion of macro ‘ITK_TEMPLATE_TXX’
#if ITK_TEMPLATE_TXX
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleAttribute.h:22:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.cxx:15:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h: In copy constructor ‘itk::ParticleEventWithIndex::ParticleEventWithIndex(const itk::ParticleEventWithIndex&)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:75:3: warning: base class ‘class itk::ParticleEvent’ should be explicitly initialized in the copy constructor [-Wextra]
ParticleEventWithIndex(const ParticleEventWithIndex &v)
^
[3/7] Building CXX object ShapeWorksRun/CMakeFiles/ShapeWorksRun.dir/ShapeWorksRun.cxx.o
FAILED: ShapeWorksRun/CMakeFiles/ShapeWorksRun.dir/ShapeWorksRun.cxx.o
/usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -IITKIOFactoryRegistration -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/Utilities -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/tinyxml -isystem /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11 -isystem /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -msse2 -msse2 -O2 -g -DNDEBUG -MD -MT ShapeWorksRun/CMakeFiles/ShapeWorksRun.dir/ShapeWorksRun.cxx.o -MF ShapeWorksRun/CMakeFiles/ShapeWorksRun.dir/ShapeWorksRun.cxx.o.d -o ShapeWorksRun/CMakeFiles/ShapeWorksRun.dir/ShapeWorksRun.cxx.o -c /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkLightObject.h:21:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkDataObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:121:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleDomain.h:109:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:132:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:498:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleVectorFunction.h:115:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionDomain.h:128:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleClipRegionDomain.h:94:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleImageDomain.h:147:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleImageDomainWithGradients.h:159:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleGradientDescentPositionOptimizer.h:154:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEntropyGradientFunction.h:212:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleQualifierEntropyGradientFunction.h:164:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleImageDomainWithHessians.h:205:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleImageDomainWithCurvature.h:192:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleImplicitSurfaceDomain.h:179:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleMeanCurvatureAttribute.h:128:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleCurvatureEntropyGradientFunction.h:191:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkPowerOfTwoPointTree.h:298:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionNeighborhood.h:148:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h:92:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleOmegaGradientFunction.h:204:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:333:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleDualVectorFunction.h:498:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEnsembleNormalPenaltyFunction.h:130:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEnsembleMeanFunction.h:98:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEnsembleEntropyFunction.h:184:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleGeneralEntropyGradientFunction.h:187:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:263:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:170:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleAttribute.h:22:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h: In copy constructor ‘itk::ParticleEventWithIndex::ParticleEventWithIndex(const itk::ParticleEventWithIndex&)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:75:3: warning: base class ‘class itk::ParticleEvent’ should be explicitly initialized in the copy constructor [-Wextra]
ParticleEventWithIndex(const ParticleEventWithIndex &v)
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:20:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleCurvatureEntropyGradientFunction.h: In instantiation of ‘class itk::ParticleCurvatureEntropyGradientFunction<float, 3u>’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:294:13: required from ‘class itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:36:18: required from ‘class itk::MaximumEntropyCorrespondenceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:118:63: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEntropyGradientFunction.h:134:18: warning: ‘double itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::EstimateSigma(unsigned int, const typename itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType&, const std::vector<double>&, const PointType&, double, double, int&) const [with TGradientNumericType = float; unsigned int VDimension = 3u; typename itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::PointType = itk::Point<double, 3u>]’ was hidden [-Woverloaded-virtual]
virtual double EstimateSigma(unsigned int, const typename ParticleSystemType::PointVectorType &,
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:25:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleCurvatureEntropyGradientFunction.h:122:18: warning: by ‘double itk::ParticleCurvatureEntropyGradientFunction<TGradientNumericType, VDimension>::EstimateSigma(unsigned int, unsigned int, const typename itk::ParticleCurvatureEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType&, const std::vector<double>&, const PointType&, double, double, int&, double&) const [with TGradientNumericType = float; unsigned int VDimension = 3u; typename itk::ParticleCurvatureEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleCurvatureEntropyGradientFunction<TGradientNumericType, VDimension>::PointType = itk::Point<double, 3u>]’ [-Woverloaded-virtual]
virtual double EstimateSigma( unsigned int, unsigned int, const typename ParticleSystemType::PointVectorType &,
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:20:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleOmegaGradientFunction.h: In instantiation of ‘class itk::ParticleOmegaGradientFunction<float, 3u>’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:297:13: required from ‘class itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:36:18: required from ‘class itk::MaximumEntropyCorrespondenceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:118:63: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEntropyGradientFunction.h:134:18: warning: ‘double itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::EstimateSigma(unsigned int, const typename itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType&, const std::vector<double>&, const PointType&, double, double, int&) const [with TGradientNumericType = float; unsigned int VDimension = 3u; typename itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleEntropyGradientFunction<TGradientNumericType, VDimension>::PointType = itk::Point<double, 3u>]’ was hidden [-Woverloaded-virtual]
virtual double EstimateSigma(unsigned int, const typename ParticleSystemType::PointVectorType &,
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:28:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleOmegaGradientFunction.h:135:18: warning: by ‘double itk::ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::EstimateSigma(unsigned int, unsigned int, const typename itk::ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType&, const std::vector<double>&, const PointType&, double, double, int&, double&, unsigned int) const [with TGradientNumericType = float; unsigned int VDimension = 3u; typename itk::ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::Superclass::ParticleSystemType::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::PointType = itk::Point<double, 3u>]’ [-Woverloaded-virtual]
virtual double EstimateSigma( unsigned int, unsigned int,
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:30:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionNeighborhood.h: In instantiation of ‘class itk::ParticleRegionNeighborhood<3u>’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h:33:18: required from ‘class itk::ParticleSurfaceNeighborhood<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:311:75: required from ‘class itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:36:18: required from ‘class itk::MaximumEntropyCorrespondenceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:118:63: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:89:25: warning: ‘unsigned int itk::ParticleNeighborhood<VDimension>::FindNeighborhoodPoints(const PointType&, double, itk::ParticleNeighborhood<VDimension>::PointVectorType&) const [with unsigned int VDimension = 3u; itk::ParticleNeighborhood<VDimension>::PointType = itk::Point<double, 3u>; itk::ParticleNeighborhood<VDimension>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >]’ was hidden [-Woverloaded-virtual]
virtual unsigned int FindNeighborhoodPoints(const PointType &, double, PointVectorType &) const
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h:18:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:27,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionNeighborhood.h:63:27: warning: by ‘itk::ParticleRegionNeighborhood<VDimension>::PointVectorType itk::ParticleRegionNeighborhood<VDimension>::FindNeighborhoodPoints(const PointType&, double) const [with unsigned int VDimension = 3u; itk::ParticleRegionNeighborhood<VDimension>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleRegionNeighborhood<VDimension>::PointType = itk::Point<double, 3u>]’ [-Woverloaded-virtual]
virtual PointVectorType FindNeighborhoodPoints(const PointType &, double) const;
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:30:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:84:27: warning: ‘itk::ParticleNeighborhood<VDimension>::PointVectorType itk::ParticleNeighborhood<VDimension>::FindNeighborhoodPoints(const PointType&, std::vector<double>&, double) const [with unsigned int VDimension = 3u; itk::ParticleNeighborhood<VDimension>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleNeighborhood<VDimension>::PointType = itk::Point<double, 3u>]’ was hidden [-Woverloaded-virtual]
virtual PointVectorType FindNeighborhoodPoints(const PointType &, std::vector<double> &,
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h:18:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:27,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionNeighborhood.h:63:27: warning: by ‘itk::ParticleRegionNeighborhood<VDimension>::PointVectorType itk::ParticleRegionNeighborhood<VDimension>::FindNeighborhoodPoints(const PointType&, double) const [with unsigned int VDimension = 3u; itk::ParticleRegionNeighborhood<VDimension>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleRegionNeighborhood<VDimension>::PointType = itk::Point<double, 3u>]’ [-Woverloaded-virtual]
virtual PointVectorType FindNeighborhoodPoints(const PointType &, double) const;
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h: In instantiation of ‘class itk::ParticleSurfaceNeighborhood<itk::Image<float, 3u> >’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:311:75: required from ‘class itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:36:18: required from ‘class itk::MaximumEntropyCorrespondenceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:118:63: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleRegionNeighborhood.h:63:27: warning: ‘itk::ParticleRegionNeighborhood<VDimension>::PointVectorType itk::ParticleRegionNeighborhood<VDimension>::FindNeighborhoodPoints(const PointType&, double) const [with unsigned int VDimension = 3u; itk::ParticleRegionNeighborhood<VDimension>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleRegionNeighborhood<VDimension>::PointType = itk::Point<double, 3u>]’ was hidden [-Woverloaded-virtual]
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:27:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSurfaceNeighborhood.h:66:27: warning: by ‘itk::ParticleSurfaceNeighborhood<TImage>::PointVectorType itk::ParticleSurfaceNeighborhood<TImage>::FindNeighborhoodPoints(const PointType&, std::vector<double>&, double) const [with TImage = itk::Image<float, 3u>; itk::ParticleSurfaceNeighborhood<TImage>::PointVectorType = std::vector<itk::ParticlePointIndexPair<3u>, std::allocator<itk::ParticlePointIndexPair<3u> > >; itk::ParticleSurfaceNeighborhood<TImage>::PointType = itk::Point<double, 3u>]’ [-Woverloaded-virtual]
virtual PointVectorType FindNeighborhoodPoints(const PointType &, std::vector<double> &, double) const;
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkImageBase.hxx:34:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkImageBase.h:787,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkNeighborhoodAccessorFunctor.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkImage.h:28,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:24,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h: In instantiation of ‘class itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:36:18: required from ‘class itk::MaximumEntropyCorrespondenceSampler<itk::Image<float, 3u> >’
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:118:63: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkProcessObject.h:521:16: warning: ‘virtual void itk::ProcessObject::SetInput(const DataObjectIdentifierType&, itk::DataObject*)’ was hidden [-Woverloaded-virtual]
virtual void SetInput(const DataObjectIdentifierType & key, DataObject *input);
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropyCorrespondenceSampler.h:18:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRunApp.h:25,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksRun/ShapeWorksRun.cxx:16:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkMaximumEntropySurfaceSampler.h:94:8: warning: by ‘itk::MaximumEntropySurfaceSampler<itk::Image<float, 3u> >::SetInput’ [-Woverloaded-virtual]
void SetInput( unsigned int index, const TImage * image )
^
[4/7] Building CXX object ShapeWorksGroom/CMakeFiles/ShapeWorksGroom.dir/ShapeWorksGroom.cxx.o
FAILED: ShapeWorksGroom/CMakeFiles/ShapeWorksGroom.dir/ShapeWorksGroom.cxx.o
/usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -IITKIOFactoryRegistration -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/Utilities -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem -I/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/tinyxml -isystem /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11 -isystem /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -msse2 -msse2 -O2 -g -DNDEBUG -MD -MT ShapeWorksGroom/CMakeFiles/ShapeWorksGroom.dir/ShapeWorksGroom.cxx.o -MF ShapeWorksGroom/CMakeFiles/ShapeWorksGroom.dir/ShapeWorksGroom.cxx.o.d -o ShapeWorksGroom/CMakeFiles/ShapeWorksGroom.dir/ShapeWorksGroom.cxx.o -c /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkLightObject.h:21:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkObject.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkRegion.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkImageRegion.h:31,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/ITKv4-install/include/ITK-4.11/itkImage.h:21,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/isolate.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:20:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:121:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleDomain.h:109:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleNeighborhood.h:132:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:498:5: error: token ""error ITK_TEMPLATE_TXX is no longer a supported identifier, you should replace with ITK_MANUAL_INSTANTIATION as a replacement"" is not valid in preprocessor expressions
#if ITK_TEMPLATE_TXX
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleAttribute.h:22:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleSystem.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/transform_tool.h:18,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/center.h:22,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:21:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h: In copy constructor ‘itk::ParticleEventWithIndex::ParticleEventWithIndex(const itk::ParticleEventWithIndex&)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ITKParticleSystem/itkParticleEvents.h:75:3: warning: base class ‘class itk::ParticleEvent’ should be explicitly initialized in the copy constructor [-Wextra]
ParticleEventWithIndex(const ParticleEventWithIndex &v)
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.h:60:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:27:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.txx: In member function ‘virtual void shapetools::blur<T, D>::operator()(typename shapetools::blur<T, D>::image_type::Pointer)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.txx:47:78: warning: declaration of ‘blur’ shadows a member of ‘shapetools::blur<T, D>’ [-Wshadow]
typename itk::DiscreteGaussianImageFilter<image_type, image_type>::Pointer blur
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:27:0:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.h:33:1: note: shadowed declaration is here
{
^
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx: In function ‘int main(int, char**)’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:298:16: warning: unused variable ‘oka’ [-Wunused-variable]
bool oka = true;
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.h:60:0,
from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:27:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.txx: In instantiation of ‘void shapetools::blur<T, D>::operator()(typename shapetools::blur<T, D>::image_type::Pointer) [with T = float; unsigned int D = 3u; typename shapetools::blur<T, D>::image_type::Pointer = itk::SmartPointer<itk::Image<float, 3u> >]’:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:437:1: required from here
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.txx:48:69: warning: declaration of ‘blur’ shadows a member of ‘shapetools::blur<float, 3u>’ [-Wshadow]
= itk::DiscreteGaussianImageFilter<image_type, image_type>::New();
^
In file included from /home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/ShapeWorksGroom.cxx:27:0:
/home/jcfr/Projects/SPHARM-PDM-build-standalone/SPHARM-PDM-build/Modules/CLI/shapeworks/ShapeWorksGroom/blur.h:33:1: note: shadowed declaration is here
{
^