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100-days-of-ml-code-chinese-version

Chinese Translation for Machine Learning Infographics

acfs

A pipeline for de novo circRNA identification

algodat

Algorithm & Data structures

annotated_deep_learning_paper_implementations

tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

arnie_from_daslab

Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

autocirc

A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-python-applications

💿 Free software that works great, and also happens to be open-source Python.

awesome-python-cn

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由伯乐在线持续更新。

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bedops

:microscope: BEDOPS: high-performance genomic feature operations

bedparse

Python module and CLI tool to perform operations on BED files

bioawk

BWK awk modified for biological data

biopython-cn

Biopython Tutorial Chinese Translation

bmc

Notes on Scientific Computing for Biomechanics and Motor Control

branchapp

the desktop packege for the paper "Zhang, W., Zhu, X., Fu, Y., Tsuji, J., & Weng, Z. (2016). The prediction of human splicing branchpoints by multi-label learning. IEEE International Conference on Bioinformatics and Biomedicine (pp.254-259). IEEE Computer Society.'

branchpointer

prediction of intronic splicing branchpoints

brc-parser_from_sridhar0605

bam-readcount parser

bumhmm

BUM-HMM is a statistical modelling pipeline for interpreting high-throughput RNA structure probing data.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bwtool

A tool for bigWig files.

calculate_fraction_spliced

cardelino

cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

cdsfold_from_kiyoshiasai

ceftools

DEPRECATED Tools for manipulating cell expression format (CEF) files

cheatsheets

Official Matplotlib cheat sheets

chira

Chimeric Read Annotator