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pyteiser

Python implementation of TEISER also capable of using SHAPE structural probing data

python-boilerplate-template

PasteScript template for initializing a new buildout/pytest/travis/setuptools-enabled Python project

python-machine-learning-book

The "Python Machine Learning" book code repository and info resource

python-mode-klen

python mode

pythondatasciencehandbook

Jupyter Notebooks for the Python Data Science Handbook

r2dt

Visualise RNA secondary structure using standard layouts

r2dtool

Convert bed-like sites from transcriptomic to genomic coordinates using a genome-appropriate annotation

rbp-maps

splicing and feature maps for RBPs

rdatkit

RNA Data (RDAT) read/write scripts

ria2

Source code for R in Action, Second Edition

ribodraw

Semiautomated layout of RNA tertiary structure diagrams

ribominer

a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

rmats-turbo

rmats2sashimiplot

rme

RNA secondary structure prediction incorporating experimental constraints

rna-science-toolbox

A platform to do RNA science

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

rna2drawer

rna_covariation

A tutorial about RNA covary base pairs calling

rnacocktail

rnaframework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqlib

RNA-Seq pipeline

rnastructureidentifier

Identifying the target secondary structure from RNA structure ensemble

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

samplot

Plot structural variant signals from many BAMs and CRAMs

scale

Single-cell ATAC-seq analysis via Latent feature Extraction

scienceplots

Matplotlib styles for scientific plotting

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib