Comments (2)
considered having timestamped subdir for all log files per app run, but it requires creating directory, dont want to front-load that many methods & error handling before app is finished loading logging, etc
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new log dir has been created but hasn't been set for use by run.py
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Related Issues (20)
- Need program framework dependency graph HOT 1
- Need backup email notification in case of email send failure
- Need running tasks to kill their jobs on error HOT 4
- Email not going to inbox HOT 2
- Integrate QC checks in reports and program output
- Separate log file for each analysis, sample, and task
- Move binary configs to parent directory
- MuTect2 split jobs task HOT 1
- refactor analysis report to utilize sns analysis steps HOT 1
- refactor sns_task submodule names
- mutt does not work on cluster nodes HOT 2
- need mini targets & probes for testing HOT 1
- need small datasets for testing
- SnsWESAnalysisOutput class not compatible with other sns pipeline outputs HOT 2
- refactor 'task_lists' into 'pipelines'
- need to fork snsxt into more generic framework
- logger filehandler paths getting printed repeatedly at end of analysis
- MuTect2_split printing tons of job IDs to email log
- sns jobs being caught and Job objects generated before log file is created
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