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Oliver Barnstedt's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-tools icon caiman-tools

Tools for working with CaImAn (Giovannucci et al., 2019, eLife)

cebra icon cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

cebra-demos icon cebra-demos

CEBRA Demo Notebooks. Please see all of them at the URL below:

dhpc-nac icon dhpc-nac

Repository containing code for Barnstedt et al., Nature Communications (2024)

lindoscope2023 icon lindoscope2023

Notebooks and code for the 2023 EMBO course on imaging and data analysis

mouseflow icon mouseflow

A Python toolbox to quantify facial and bodily movement in headfixed mice.

septum-vta icon septum-vta

Repository containing code for Mocellin et al., Neuron (2024)

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