Oliver Barnstedt's Projects
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Tools for working with CaImAn (Giovannucci et al., 2019, eLife)
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
CEBRA Demo Notebooks. Please see all of them at the URL below:
Repository containing code for Barnstedt et al., Nature Communications (2024)
Course content for the lindoscope data analysis labs
Notebooks and code for the 2023 EMBO course on imaging and data analysis
A Python toolbox to quantify facial and bodily movement in headfixed mice.
Repository containing code for Mocellin et al., Neuron (2024)