Comments (2)
In the end, you might need up to 10GB of docker memory - that is what I used with my 16GB laptop, and it worked fine! The error you send was indeed memory limit related. Here is the list of all 69 annotations that violate the whitespace rules
trailing-whitspace-violations.txt
from c-elegans-phenotype-ontology.
Fixed with
#30
from c-elegans-phenotype-ontology.
Related Issues (20)
- Illegal equivalencies in WBPhenotype HOT 2
- Duplicate definitions HOT 1
- WBP-DPO logical alignment review HOT 4
- quality part_of anatomical entity HOT 9
- Release tag different than release date (2023-07-10 vs 2023-07-12) HOT 4
- Remove duplicates HOT 4
- BFO_0000070 ("s depends on") obsolete? Replace with RO:0002502? HOT 4
- Implement Upheno absent pattern HOT 5
- There are a bunch of classes in the ontology with no labels HOT 3
- We need to update the base product and switch to newest ODK HOT 1
- 7 unsatisfiable classes due to broken EQ: HOT 2
- Fix abnormal phenotypes HOT 5
- Create an OBO artefact that just contains terms and class hierarchy HOT 2
- change hasComponent some abnormal to hasModifier some abnormal HOT 1
- Tidy up WBP Upper Level HOT 11
- Investigate Bus Error of last release attempt HOT 3
- Syntax error in Apr 21 2019 release HOT 2
- Fix unfolded protein response terms HOT 1
- Deal with external.txt download. Currently skipped. HOT 2
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