Comments (4)
I am unclear what "still wants" means here. There are no direct dependencies between the Cyclops source code and RTools (beyond gcc >= 4.6.3
). I suspect there are other packages for which you have already compiled with the older compiler that no longer link when some packages are compiled with the newer compiler.
What is the error message you are getting? And steps did you take to generate that message? Plus, further info about your system (R version, package versions, etc.) would be helpful.
from cyclops.
You may want to also try devtools::find_rtools()
.
from cyclops.
Ok let me be more clear then :)
- I installed the latest version of Rtools which is currently 3.4
- I run install_github("ohdsi/Cyclops") in R
results: popup "Install Build Tools" Building R package from source requires installation of additional build tools. Do you want to install the additional tools now?"
It then installs Rtools 3.3 and the install_github works fine afterwards. I would expect Rtools3.4 would be enough since:
devtools::find_rtools()
[1] TRUE
I reproduced this by removing Rtools 3.3 and do the whole thing again.
Info:
platform x86_64-w64-mingw32
arch x86_64
os mingw32
system x86_64, mingw32
status
major 3
minor 3.1
year 2016
month 06
day 21
svn rev 70800
language R
version.string R version 3.3.1 (2016-06-21)
nickname Bug in Your Hair
from cyclops.
Pop-up error message is from devtools
. Not likely a Cyclops
issues. @PRijnbeek, please re-open if this issue remains after Rtools 3.4 becomes default.
from cyclops.
Related Issues (20)
- (Solved) 'Rcpp_precious_remove' not provided by package 'Rcpp'
- 'NAs produced by integer overflow' when calling `confint()` HOT 3
- Add test for proportionality assumption HOT 2
- (Tiny) differences in optimal hyperparameter depending on number of threads HOT 2
- Small differences in prediction between operating systems HOT 3
- Add location parameters for coefficient specific priors HOT 2
- Create new release? HOT 4
- Merge fix for likelihood profile computation into main at some point? HOT 1
- upper and lower bound of CI are equal, but no failure flag
- what is the meaning of "POOR_BLR_STEP"?
- as(<numLike>, "dgeMatrix") is deprecated
- remove dependency on boost-headers `BH`
- arrow_S4 branch cross-validation generating unexpected output to the console HOT 1
- considerable time spent in `setPrior` for IHT and BAR HOT 3
- Cox model handling of intervals? HOT 2
- listOpenCLDevices returns character(0)
- Please don't forget to update package website when creating a release
- Faster likelihood profiling? HOT 2
- Add option for `getCyclopsProfileLogLikelihood` HOT 6
- getCyclopsProfileLogLikelihood crashes when all slope values are NA
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