ojcharles/mutationfeatures

Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)

mutationfeatures's Issues

natlang + s4pred -> 1 tool

s4pred is essentially doing embedding -> 2dprediction
prot5 (the current natlang embedding) is also capable of doing that , but we only take the embedding.

Clean up the container by having only a single approach for these two things.

make the documentation, readme etc nicer

feature: add wt, mt, diff hmm emission probabilities

check licenses of dependencies -> this repo's license and documentation

Non interactive in ubuntu

export DEBIAN_FRONTEND=noninteractive

+Feature

Generate a HMM profile for the psi_blast alignment, and use the to_aa emmission probability as a feature.
Should be fairly similar to the pfam emmission probability used in other tools, but garuanteed value per residue