olemussmann/emg_jupyter

Create a JupyterLab environment for the EMG project

1. Install docker and docker-compose.
2. Copy your data in the work/data folder.
3. Run ./set_environment.sh to prepare an .env file. It contains your UID and GID that will be used to make data transfer between the Jupyter environment and your host system seamless. You only need to do this once.
4. Summon the JupyterLab environment with docker-compose up.
5. Click on the link http://127.0.0.1:8888/lab?token=... that appears in the log.
6. Work in the work/notebooks folder within JupyterLab.
7. Shutdown the JupyterLab environment from the browser, or press CTRL+C in the terminal.
8. Clean up with docker-compose down.