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10xdash

Pairwise similarity metrics for 10x barcoded RNASeq datasets

2020-test-sencha

2020-workflows-paper

Strategies for leveraging workflow systems to streamline large-scale biological analyses

2021-01-27-olga-remove-protein

2021-paper-metapangenomes

2022-ced9-bcl2

Structural homology between C. elegans Ced9 and human BCL2

2022-mouse-lemur-tabula-microcebus

Code for cross-species and uTAR sequence homology analyses for two Tabula Microcebus papers

2022-sourmash-multigather-kmer-stats

Do sourmash multigather, but use a background k-mer distribution model to quantify significance of matches, and report all matching k-mer sequences

2022-sourmash-multisearch

Search multiple query k-mer signatures against a database

2023-functional-homology-paper

abi2fastq

abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ

absense

Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.968420v1)

algorithm-template

alphafold

Open source code for AlphaFold.

ama

:raising_hand: Ask @notwaldorf anything!

anchor

Anchor: Find bimodal, unimodal, and multimodal features in your data

awesome

:sunglasses: Curated list of awesome lists

awesome-expectations

Examples of great academic lab expectations, manuals, policies for joining and being in the lab

awesome-nextflow

A curated list of nextflow based pipelines

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

bedtools

A powerful toolset for genome arithmetic.

bedtools_flank_seq_strand_test

Repository to test bedtools flank/fasta/strand confusion

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

biogo

biogo is a bioinformatics library for Go

bioinformaticsbeyonce

Repo for BioinformaticsBeyonce twitch stream code

biom262-2016

Code and notebooks for BIOM262

bionode-gsnap

Node.js interface to the GSNAP spliced aligner for RNA-Seq

bionode-ncbi

Node.js module for working with the NCBI API (aka e-utils).