problem in installation

[ompl]

problem in installation

[mamoll]

Original comment by Mark Moll (Bitbucket: mamoll, GitHub: mamoll).

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This is probably already fixed in the omplapp & ompl repositories. Specifically, look at these commits:

f5d15c925e78bc7eadd705bdd18a7f42c6cfcdb3
176c21386be52f5b156f269aac9d1646ebf0a058

The python libs are in a different place on Ubuntu 13.04.

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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OK thanks to the hints, the problems concerning cmake seem to be resloved:

-- Boost version: 1.49.0
-- Found the following Boost libraries:
-- date_time
-- thread
-- program_options
-- serialization
-- filesystem
-- system
-- unit_test_framework
-- Boost version: 1.49.0
-- Found the following Boost libraries:
-- python
-- checking for module 'ccd=1.4'
-- package 'ccd=1.4' not found
-- checking for module 'fcl>=0.2.7'
-- package 'fcl>=0.2.7' not found
-- CCD library not found. Will download and compile.
-- FCL library not found. Will download and compile.
-- checking for module 'assimp'
-- package 'assimp' not found
-- Assimp library not found. Will download and compile.
-- Boost version: 1.49.0
-- Found the following Boost libraries:
-- python
-- Code for module base not found; type "make update_bindings"
-- Code for module control not found; type "make update_bindings"
-- Code for module geometric not found; type "make update_bindings"
-- Code for module tools not found; type "make update_bindings"
-- Code for module util not found; type "make update_bindings"
-- Boost version: 1.49.0
-- Found the following Boost libraries:
-- python
-- Code for module rrtstar not found; type "make update_bindings"
-- Boost version: 1.49.0
-- Found the following Boost libraries:
-- python
-- Code for module app not found; type "make update_bindings"
-- Configuring done
-- Generating done
-- Build files have been written to: /home/diablo/Desktop/omplapp-0.12.2-Source/build/Release

but now in whole update_binding stops whit these two errors:

Scanning dependencies of target fcl
[ 1%] Building CXX object src/CMakeFiles/fcl.dir/BV/AABB.cpp.o
[ 2%] Building CXX object src/CMakeFiles/fcl.dir/BV/OBBRSS.cpp.o
[ 4%] Building CXX object src/CMakeFiles/fcl.dir/BV/kDOP.cpp.o
[ 5%] Building CXX object src/CMakeFiles/fcl.dir/BV/RSS.cpp.o
make[3]: *** [ompl/py-bindings/CMakeFiles/update_util_bindings] Error 1
make[2]: *** [ompl/py-bindings/CMakeFiles/update_util_bindings.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....

giving these errors, it continues to this:

[ 86%] Completed 'fcl'
[ 86%] Built target fcl
make[1]: *** [ompl/py-bindings/CMakeFiles/update_bindings.dir/rule] Error 2
make: *** [update_bindings] Error 2

which terminates the process.

[mamoll]

Original comment by Mark Moll (Bitbucket: mamoll, GitHub: mamoll).

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Can you the file pyplusplus_util.log? You did type "make installpyplusplus" at some point, right?

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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Sure. Here you are:

INFO Loading cache file "/home/diablo/Desktop/omplapp-0.12.2-Source/build/Release/pyplusplus_util.cache".
ERROR Error occured while reading cache file:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/pygccxml/parser/declarations_cache.py", line 162, in __load
cache = pickle.load( cache_file_obj )
EOFError
INFO Invalid cache file: [/home/diablo/Desktop/omplapp-0.12.2-Source/build/Release/pyplusplus_util.cache] Regenerating.
INFO Parsing source file "bindings/util.h" ...
INFO gccxml cmd: /usr/local/bin/gccxml -I"." -I"/home/diablo/Desktop/omplapp-0.12.2-Source/ompl/src" -I"/home/diablo/Desktop/omplapp-0.12.2-Source/src" -I"/usr/include/python2.7" -I"/usr/include" -I"/home/diablo/Desktop/omplapp-0.12.2-Source/build/Release/assimp-prefix/include" -I"/home/diablo/Desktop/omplapp-0.12.2-Source/ompl/src/external" "bindings/util.h" -fxml="/tmp/tmpIyffpw.xml"
In file included from /usr/include/endian.h:60,
from /usr/include/ctype.h:40,
from /usr/include/c++/4.7/cctype:44,
from /usr/include/c++/4.7/bits/localefwd.h:44,
from /usr/include/c++/4.7/string:45,
from /usr/include/c++/4.7/stdexcept:40,
from bindings/util.h:40:
/usr/include/x86_64-linux-gnu/bits/byteswap.h: In function 'unsigned int __bswap_32(unsigned int)':
/usr/include/x86_64-linux-gnu/bits/byteswap.h:47: error: '__builtin_bswap32' was not declared in this scope
/usr/include/x86_64-linux-gnu/bits/byteswap.h: In function '__uint64_t __bswap_64(__uint64_t)':
/usr/include/x86_64-linux-gnu/bits/byteswap.h:111: error: '__builtin_bswap64' was not declared in this scope
Traceback (most recent call last):
File "/home/diablo/Desktop/omplapp-0.12.2-Source/ompl/py-bindings/generate_bindings.py", line 642, in
globals()'ompl_'+module+'_generator_t'
File "/home/diablo/Desktop/omplapp-0.12.2-Source/ompl/py-bindings/generate_bindings.py", line 606, in init
code_generator_t.init(self, 'util', None, replacement)
File "/home/diablo/Desktop/omplapp-0.12.2-Source/ompl/py-bindings/ompl/bindings_generator.py", line 144, in init
indexing_suite_version = 2 )
File "/usr/local/lib/python2.7/dist-packages/pyplusplus/module_builder/boost_python_builder.py", line 95, in init
, indexing_suite_version)
File "/usr/local/lib/python2.7/dist-packages/pyplusplus/module_builder/boost_python_builder.py", line 138, in __parse_declarations
decls = reader.read_files( files, compilation_mode )
File "/usr/local/lib/python2.7/dist-packages/pygccxml/parser/project_reader.py", line 217, in read_files
return self.__parse_file_by_file(files)
File "/usr/local/lib/python2.7/dist-packages/pygccxml/parser/project_reader.py", line 242, in __parse_file_by_file
decls = reader.read_file( header )
File "/usr/local/lib/python2.7/dist-packages/pygccxml/parser/source_reader.py", line 205, in read_file
return self.read_gccxml_file( source_file )
File "/usr/local/lib/python2.7/dist-packages/pygccxml/parser/source_reader.py", line 230, in read_gccxml_file
raise error
pygccxml.parser.source_reader.gccxml_runtime_error_t: Error occured while running GCC-XML:

And yes, I have done "make installpyplusplus".

[mamoll]

Original comment by Mark Moll (Bitbucket: mamoll, GitHub: mamoll).

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I am sorry, but I forgot that there have been some other unreleased changes that you will need. You need a newer version of gccxml. This commit has the necessary changes for the installPyPlus.sh.in script:

59a416f9861bf7287fb9b80d934f57cd6b9e7fb4

After you apply these change, re-run cmake, type "make installpyplusplus" again, and type "make update_bindings" again.

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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Sir, thank you very much, its all complete. Well done!

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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Its done now, with 3 files edited.

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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Error occurred running the program.

[mamoll]

Original comment by Reza_Saidafkan (Bitbucket: Reza_Saidafkan, ).

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All the cmake, make installpyplusplus, make update_bindings, make -j 2 commands copmpleted without any particular errors. But trying to run "test make", it encountered these errors:

21/23 Test #21: test_geometric_compoundstate.py ...***Exception: SegFault 0.75 sec
Start 22: test_control.py
22/23 Test #22: test_control.py ...................***Exception: SegFault118.90 sec
Start 23: test_py_boost_function.py
23/23 Test #23: test_py_boost_function.py ......... Passed 0.03 sec

87% tests passed, 3 tests failed out of 23

Total Test time (real) = 152.32 sec

The following tests FAILED:
20 - test_geometric.py (SEGFAULT)
21 - test_geometric_compoundstate.py (SEGFAULT)
22 - test_control.py (SEGFAULT)
Errors while running CTest
make: *** [test] Error 8

[mamoll]

Original comment by Mark Moll (Bitbucket: mamoll, GitHub: mamoll).

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Which version of python are you using? What is the output if you run ompl/tests/geometric/test_geometric.py? Make sure that the python headers, libraries, interpreter and boost.python version are all using the same version of python.

[mamoll]

Original comment by Mark Moll (Bitbucket: mamoll, GitHub: mamoll).

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No response to request for more information. Can't reproduce the error.