Linked content for reproducible science

[open-traits-network]

Linked content for reproducible science

[jhpoelen]

@hoganhaben probably needless to say but please note that FAIR (as in https://www.force11.org/group/fairgroup/fairprinciples) does not mandate open (as in https://opendefinition.org/). Also, I find the principle rather vague. But, I do realize that the acronym is catchy and that mentioning it might lead to a greater adoption in some circles.

From https://www.force11.org/group/fairgroup/fairprinciples :

A1.2 the protocol allows for an authentication and authorization procedure, where necessary.

[chiras]

We have a few reproducible tutorials for the FENNEC that could be used here: https://fennec.readthedocs.io/en/latest/user.html#case-studies

[bmaitner]

@rachaelgallagher would this also utilize the same type of infrastructure as the member profiles and data registry?

So would this include:
Code resources
Trait protocols
Metadata standards
Tutorials
other stuff?

[bmaitner]

Code/data tutorials:
https://www.britishecologicalsociety.org/wp-content/uploads/2017/12/guide-to-reproducible-code.pdf
https://www.britishecologicalsociety.org/wp-content/uploads/Publ_Data-Management-Booklet.pdf

Handbooks:

https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2435.12776%4010.1111/%28ISSN%291365-2435.SICB_2018

https://www.publish.csiro.au/bt/pdf/BT12225

https://www.sciencedirect.com/science/article/pii/S1433831918301434

[hoganhaben]

a few links from the Slack workspace--

Open Science badges: https://cos.io/our-services/open-science-badges/

COPDESS statement (Coalition for Publishing Data in the Earth and Space Sciences)
http://www.copdess.org/enabling-fair-data-project/commitment-to-enabling-fair-data-in-the-earth-space-and-environmental-sciences/

[jhammock]

Training social network for basic data tools supporting reproduceability; aimed at scientists without coding experience- OpenRefine, intro to Python, SQL and R, etc.: https://datacarpentry.org/

[fdschneider]

Concerning FAIR and OPEN: You could include our best-practice guidelines for publishing trait data from the ETS website and Supplementary matarial of our paper. You can either

• point to the ETS website URL https://terminologies.gfbio.org/terms/ets/pages/bestpractice.html

or

• duplicate the guidelines on the OTN website. I won't have the time to migrate that myself but you can pick everything from: https://github.com/EcologicalTraitData/ETS/blob/master/bestpractice.Rmd

[fdschneider]

Also, there is my traitdataform package assisting with harmonizing trait data into the ETS scheme. CRAN link https://CRAN.R-project.org/package=traitdataform

[rachaelgallagher]

thanks @fdschneider this is a good one to add

[jhpoelen]

We now have a dedicated, editable, Resources page, so please add your linked content using the "edit" link in the OTN Resources page at:

http://opentraits.org/resources.html

Closing issue.