Comments (2)
Hi @giomaklouf. Thanks for using ROGUE in your analysis. It turns out that the small value of the parameter span is causing this problem. The parameter span controls the degree of smoothing for a loess fitting, but there would be errors when a small number of cells are used. A larger span value, for example 0.7, would address this. Please let me know if this works.
ROGUE::SE_fun(new_exp, span=0.7, r =1)
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It worked @PaulingLiu. Thanks for the assistance!
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Related Issues (12)
- question about line 327 and 328 in file R/ROGUE.R
- Error in predLoess(object$y, object$x, newx = if (is.null(newdata)) object$x else if (is.data.frame(newdata)) as.matrix(model.frame(delete.response(terms(object)), : NA/NaN/Inf in foreign function call (arg 5) HOT 3
- Interpretation
- multi sample/batch data
- Use raw or transformed counts
- Error in predLoess HOT 2
- Use ROGUE on a large data of single cell HOT 1
- Rogue for scATAC? HOT 1
- what's the NA mean in the rouge result HOT 2
- Could I use rogue for seurat_clusters and orig.ident ?
- Get ROGUE value for multi cell clusters from a same sample
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