Comments (2)
Hi @dm8000. A larger span value, for example 0.9, might address this. Please let me know if this works.
rogue.res <- rogue(expr, labels = meta$leiden_0.8, samples = meta$Treatment, platform = "UMI", span = 0.9)
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This worked! Thank you!
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Related Issues (12)
- question about line 327 and 328 in file R/ROGUE.R
- Error in predLoess(object$y, object$x, newx = if (is.null(newdata)) object$x else if (is.data.frame(newdata)) as.matrix(model.frame(delete.response(terms(object)), : NA/NaN/Inf in foreign function call (arg 5) HOT 3
- Interpretation
- multi sample/batch data
- Use raw or transformed counts
- SE_fun function giving a error in predLoess HOT 2
- Use ROGUE on a large data of single cell HOT 1
- Rogue for scATAC? HOT 1
- what's the NA mean in the rouge result HOT 2
- Could I use rogue for seurat_clusters and orig.ident ?
- Get ROGUE value for multi cell clusters from a same sample
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