paulnschofield/mpath

Automatically exported from code.google.com/p/mpath

Mouse Pathology Ontology (MPATH)

mpath's Issues

Why is Epithelioma a syn for sebaceous adenoma

Migrated from:
monarch-initiative/monarch-disease-ontology-RETIRED#105

[Term]
id: MPATH:230
name: sebaceous adenoma
namespace: mouse_pathology.ontology
def: "Adenoma of sebaceous cells; regular architecture of gland not mantained. Large numbers of immature germinative cells present. Mitoses. (M-8410/0)." [Pathbase:_Curation]
***synonym: "Epithelioma" RELATED [Pathbase:_Curation]
is_a: MPATH:219  ! adnexal and skin appendage tumor
is_a: MPATH:270  ! adenoma

seems way too generic to attach as a synonym

should there not be a generic epithelial neoplasm as a distinct concept in MPATH?

current linearized graph is:

 / MPATH:0 ! pathological entity
  is_a MPATH:603 ! pathological anatomical entity
   is_a MPATH:218 ! neoplasm
    is_a MPATH:219 ! adnexal and skin appendage tumor
     is_a MPATH:230 ! sebaceous adenoma ***  [SYNONYM: "Epithelioma" (related)]
    is_a MPATH:267 ! glandular tumor
     is_a MPATH:270 ! adenoma
      is_a MPATH:230 ! sebaceous adenoma ***  [SYNONYM: "Epithelioma" (related)]
    is_a MPATH:556 ! potentially cancerous lesions
     is_a MPATH:270 ! adenoma
      is_a MPATH:230 ! sebaceous adenoma ***  [SYNONYM: "Epithelioma" (related)]

Seems it would be most appropriate to attach this syn to MPATH:219

MPATH:219 ! adnexal and skin appendage tumor [DEF: "Tumors of the skin, its constituent structures and glands including the mammary gland, apocrine and eccrine glands, hair follicles and associated structures."

Is anyone actively working on MPATH?

We need a general discussion on modelling pathological entities across OBO and in particular phenotype ontologies.

Give MPATH_576 a superclass

MPATH_576 currently has no named superclass, is it possible to stash it somewhere appropriate in the hierarchy?

@leechuck @PaulNSchofield If you give me write access I can do this myself (just under the root for now because I really dont know what this is :)

path base obo file missing root.

http://eulep.pdn.cam.ac.uk/Pathology_Ontology/mpath.obo is missing
[Term]
id: MPATH:0
name: pathological entity
def: "Pathological structure or process" [Pathbase: Curation]

Has several classes that refer to this term.

Add obofoundry topic to repo metadata

The OBO Foundry has recently created a topics page at https://github.com/topics/obofoundry. It would be great if you could add the obofoundry topic to your repository, since it's currently listed as active in the OBO Foundry. If you're not sure how to do that, follow the instructions here. The main issue for this task is at OBOFoundry/OBOFoundry.github.io#1538 in case you want some more context or to join the larger discussion.

typo text-def of "complex tumor"

mutiple = 'multiple'