paulshili/nettensorpattern

🧬 Network Tensor Pattern

A python package implementation to the C codebase of the paper A Local Tensor Clustering Algorithm to Annotate Uncharacterized Genes with Many Biological Networks with the addition of a second method of Global Tensor Clustering.

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🔔 Requirements

⚙️ OS Supported:

Windows	🟢
Linux	🟢
MacOS	🟢

⚠️ Requires Python ≤ 3.11 due to setuptools being deprecated after 3.12

• Consider installing a python environment manager i.e. Anaconda/Miniconda to install Python ≤ 3.11

⚠️ GCC is required in order to compile the C source files and headers into a C Python Extension.

💻 Windows Only:

• Consider installing MingW via Sourceforge (as its website is down as of March 2021)

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🏃 Package Compilation

To compile the C headers and source code:

python setup.py pnt --compile

This should generate a file with our C Python Extensions called Tensor_Python.so under ./src/patnetstensor

To install the python package:

pip3 install .

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