pellem / openalea.rtfd.io Goto Github PK
View Code? Open in Web Editor NEWThis project forked from openalea/openalea.rtfd.io
OpenAlea main documentation site
This project forked from openalea/openalea.rtfd.io
OpenAlea main documentation site
====================== OpenAlea Documentation ====================== .. image:: https://readthedocs.org/projects/openalea/badge/?version=latest :target: https://openalea.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status Institutes (Sponsors) --------------------- OpenAlea is developed, maintainted and mainly funded by three institutes: CIRAD, INRIA, and INRAE. License ------- OpenAlea is licensed under the CeCILL-C free software license agreement. Official documentation ---------------------- https://readthedocs.org/projects/openalea.readthedocs.io Description =========== OpenAlea is an open source project primarily aimed at the plant research community. It is a distributed collaborative effort to develop Python libraries and tools that address the needs of current and future works in Plant Architecture modeling. OpenAlea includes modules to analyze, visualize, and model the functioning and growth of plant architecture. This repository contains all the documentation published in the `official documentation of OpenAlea <https://readthedocs.org/projects/openalea.readthedocs.io/en/latest>`_. Information about OpenAlea can also be found in the wiki: https://github.com/openalea/openalea.rtfd.io/wiki Installation ============ Install Miniforge 3 =================== The simplest way to install OpenAlea and all its dependencies is to use Miniforge 3: `Install Miniforge 3 <https://github.com/conda-forge/miniforge>`_ Create OpenAlea environment: ============================= Once you have installed Miniforge, you will have access to Miniforge Prompt (Windows) or from a terminal (Mac/Linux). **Open Miniforge Prompt (Windows) or a terminal (Mac/Linux) and type:** .. code-block:: bash mamba create -n openalea -c openalea3 openalea.plantgl openalea.lpy openalea.visualea openalea.mtg notebook -y .. code-block:: bash mamba activate openalea You should now be in your "openalea" environment! Well Done! Usage ===== Tutorials to use the different features of OpenAlea can be found in the `documentation <https://openalea.readthedocs.io/en/latest/tutorials/index.html>`_. Contribution ============ You can contribute to the OpenAlea project by participating in the `Git Workflow <http://virtualplants.github.io/contribute/devel/git-workflow.html>`_, or by opening an issue or a pull request to address a problem or a fix. Troubleshooting =============== Installation Issues ------------------- Dependency Errors ~~~~~~~~~~~~~~~~~ **Description**: Installation fails with dependency errors. **Solution**: Ensure that you are using the latest version of Miniforge and that your environment is clean before installing OpenAlea. You can remove an existing environment with: .. code-block:: bash mamba env remove -n openalea Then, try creating the environment again. Command Not Found ~~~~~~~~~~~~~~~~~ **Description**: "mamba" command not found. **Solution**: Make sure Miniforge is correctly installed and added to your system's PATH. You might need to restart your terminal or Miniforge Prompt. Module Import Issues -------------------- Modules Not Found in Jupyter Notebook ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ **Description**: OpenAlea modules not found when importing in a Jupyter notebook. **Solution**: Ensure that you have activated the OpenAlea environment before starting the Jupyter notebook. You can activate the environment with: .. code-block:: bash mamba activate openalea If the issue persists, try installing the Jupyter notebook within the OpenAlea environment: .. code-block:: bash mamba install notebook Updating OpenAlea ----------------- How to Update OpenAlea ~~~~~~~~~~~~~~~~~~~~~~ **Description**: Updating OpenAlea to the latest version. **Solution**: To update OpenAlea and its dependencies, activate your OpenAlea environment and run: .. code-block:: bash mamba update -c openalea3 openalea.plantgl openalea.lpy openalea.visualea openalea.mtg Contribution ------------ How to Contribute to OpenAlea ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ **Description**: Ways to contribute to the OpenAlea project. **Solution**: You can contribute by participating in the `Git Workflow <http://virtualplants.github.io/contribute/devel/git-workflow.html>`_, or by opening an issue or a pull request on the OpenAlea GitHub repository. Additional Resources -------------------- Tutorials and Examples ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ More tutorials and examples can be found in the `official documentation <https://openalea.readthedocs.io/en/latest/tutorials/index.html>`_. Contact ======= For further assistance, you can reach out to the development team creating an `issue on github <https://github.com/openalea/openalea/issues>`_.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.