Pete's Projects
Quantitative Pathology
Support for parsing the BioImage Model Zoo spec in Java
QuPath scripts for 'Development of a semi-automated method for tumor budding assessment in colorectal cancer and comparison with manual methods'
Attempting to port QuPath's default cell detection to Python
Exploring GitHub projects
QuPath documentation
QuPath extension to interactively align images
A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
A QuPath extension for working with Deep Java Library (https://djl.ai)
QuPath extension using JPen for graphics tablet input
QuPath extension to work with images through OMERO's web API
QuPath extension for Segment Anything Model (SAM)
QuPath extension to run StarDist nucleus detection
Template to help create a new QuPath extension
Use TensorFlow from QuPath
ImgLib2 RealTransform brought to QuPath
QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
Reusable JavaFX tools for QuPath (and beyond)
GitHub pages site
Segment Anything Model API
Specification for the bioimage.io model description file.
Demo of square root transform for variance stabilization
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
:fire: :rocket: Blazingly fast pipeline for patch-based classification in whole slide images