This is my lab notebook. The goal is to be able to keep track of various experiments/hacks/and algorithms in a more reproducible and transparent fashion.
You'll find below the system setup. I'm using IPython Notebook as the note taking environment.
Notebooks
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Univeristies in the News: Playing around with the NewsReader API
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Measuring number of occurrences of paths between classes in RDF Graphs
May 18, 2014 I use Mac OS X 10.9.2
Software is installed through homebrew. For iPython I'm using virtualenv + virtualenvwrapper installed using Virtualenv Burrito. Installed packages are listed below.
The setup is based on the instructions at: http://www.lowindata.com/2013/installing-scientific-python-on-mac-os-x/
IPython virtualenv installed packages:
Jinja==1.2
Jinja2==2.7.1
MarkupSafe==0.18
Pattern==2.6
Pygments==1.6
SPARQLWrapper==1.5.2
distribute==0.6.49
html5lib==1.0b3
ipython==1.0.0
isodate==0.4.9
matplotlib==1.3.0
mpld3==0.0.1
networkx==1.8.1
nose==1.3.0
numpy==1.7.1
pandas==0.12.0
pyparsing==1.5.7
python-dateutil==2.1
pytz==2013.8
pyzmq==13.1.0
rdflib==4.0.1
readline==6.2.4.1
scipy==0.12.0
six==1.3.0
stevedore==0.10
textutils==0.1
tornado==3.1
virtualenv==1.9.1
virtualenv-clone==0.2.4
virtualenvwrapper==4.0
wsgiref==0.1.2
Homebrew user environment installed packages and versions:
cloog 0.18.0
cmake 2.8.10.2 2.8.8
exiftool 9.23
fourstore 1.1.4
freetype 2.4.11
gd 2.0.36RC1
gdbm 1.10
gettext 0.18.1.1
gfortran 4.8.1
git 1.7.11.3
glib 2.30.3
gmp 5.1.2
gnuplot 4.6.2
graphviz 2.28.0
isl 0.11.2
jpeg 8d
libffi 3.0.10
libmpc 1.0.1
libpng 1.5.14
lua 5.1.5
mercurial 2.1.2
mpfr 3.1.2
mysql 5.5.25a
pcre 8.30
phantomjs 1.9.0
pidof 0.1.4
pkg-config 0.25 0.27 0.28
portmidi 217
pyqt 4.10.2
python 2.7.3 2.7.5
qt 4.8.5
raptor 2.0.7 2.0.9
rasqal 0.9.28 0.9.29
readline 6.2.4
sdl 1.2.15
sdl_image 1.2.12
sdl_mixer 1.2.12
sdl_ttf 2.0.11
sip 4.14.7
sqlite 3.7.13 3.7.17
swig 2.0.4
wget 1.13.4
xz 5.0.3
zeromq 3.2.3