phillip-a-richmond Goto Github PK

ald_modifier_project

This repository houses scripts for analysis and plotting of the ALD Modifier Project headed by Clara van Karnebeek

annotate_cnvs

This is a repo that contains recipes for CNV annotation

annotatevariants

This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.

annotsv

Annotation and Ranking of Structural Variation

arcsv

Complex structural variant detection from WGS data

arcsv-docker

A docker container for the arc-sv tool

arrayfromwgs

This repository contains code and instructions for setting up the ArrayFromWGS analysis, which extracts read-depth and genotype information from curated genomic probe sets.

bioinformatics-introductory-analysis-course

This repository contains course material for Phillip Richmond's Introduction to Bioinformatics Analysis Course

bioinformatics-tools

This is a toolbox for useful scripts, methods, tools, and programs that I've written and am kindly making available for other people to use.

buildcontrolcohort

This repo is for building a control cohort for WGS and RNAseq.

buildinhousedb

This set of scripts will build an in-house database once you deposit VCF files into a directory.

cayman

Cayman is a Jekyll theme for GitHub Pages

choosealicense.com

A site to provide non-judgmental guidance on choosing a license for your open source project

computecanada_eot

This is a repository for the Education, Outreach and Training tutorials offered by Compute Canada

expansionhunterdenovo

A suite of tools for detecting expansions of short tandem repeats

flextyper-manuscript-analysis

This is the repository for the analysis of data in the FlexTyper project

flextyper_manuscript

A repository for the code and analysis for the FlexTyper paper

genomeanalysismodule

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

hackseq_projects_2016

haplotypingutils

Some scripts and utilities for haplotyping analysis collaboration with Hayden lab.

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

old-website.io

This is the website for Phillip A Richmond. I guess to keep some of my stuff in one spot?

phillip-a-richmond.github.io

personal website

precisionhealthvirtualenvironment

This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.

reproducible_analysis_demo

rgdmodule

An interactive website utilizing synthetic rare genetic disease scenarios to teach about the process of variant/gene prioritization in rare disease diagnosis.

scrnaseq-docker

This is a docker container for use in scRNAseq analysis.

stix-docker

Dockerfile for Ryan Layer's stix sv annotator + associated tools

sv_calling_and_annotation

This repo details the SV annotation for Illumina WGS data.

varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications