planteome Goto Github PK
Name: The Planteome Project
Type: Organization
Bio: Home for the Common Reference Ontologies for Plants
Location: Corvallis, OR, USA
The Planteome Project's Projects
co_360-sugar-kelp-traits
Sugar Kelp trait ontology
co_365-faba-bean-traits
co_366-bambara-goundnut-traits
co_369-sainfoin-traits
co_371-blueberry-traits
Blueberry trait Ontology
co_372-strawberry-traits
Strawberry trait Ontology
curate_site
Drupal site for curate.planteome.org
django_curate
dl-plant-model-trainer
gene_nomenclature
gene nomenclature files
go-site-xrefs-fork
Use this to add xrefs to metadata/db-xrefs.yaml and submit a pull request. Then they will be in the global xref file that AmiGO2 uses. Before making any changes, you need to update the fork to be consistent with the GO version. Use "git fetch upstream, git merge upstream/master, git push.
minerva
mybiocaddie
Template for generating your own mycaddie metadata repo
noctua
Graph-based modeling environment for biology, including prototype editor and services
noctua-models
Models for Planteome version of Noctua
ontology-variable-request-app
plant-characters
Draft version of a set of plant character terms describing leaves.
plant-disease-ontology
Repository for the Plant Disease Ontology
plant-experimental-conditions-ontology
Repository for the Plant Experimental Conditions Ontology
plant-image-desktop-classifier
Desktop Python Tk application for manual annotation of whole plant images with basic PO and TO terms.
plant-ontology
Repository for the Plant Ontology
plant-phenoscape-data
Data files for the Plant Phenoscape Knowledgebase
plant-stress-ontology
An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress
plant-trait-ontology
Explore the Plant Trait Ontology on the Planteome site.
planteome-analyses
This is a place to store folders of results, and notes on analyses performed using the Planteome ontologies. Please collect the documents in a folder with an explicit name and date (e.g. fall-2015)
planteome-annotation-data
This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.
planteome-core
Repository (and tracker) for a planteome.owl importer for the whole project
planteome-data-visualization
Repository for the Data and Visualization working group
planteome-deep-segmenter-cyverse-dockerized
planteome-deep-segmenter-original
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