planteome/co_350-oat-traits

Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO

co_350-oat-traits's Issues

Create: test trait

Submitter

Name	Laurel Cooper
Program	Oregon State University

Creation Request

Trait Name	test trait
Definition	description
Trait Class	Abiotic Stress
Measurement Method	visual
Measurement Type	Unit
Measurement Unit	g

CO_350:0000491 Anthracnose severity

CO_350:0000491 Anthracnose severity

Def'n:Anthracnose severity

It's not clear what this means. Is this referring to the plant response? Please provide entity and pathogen name
The definition should be more descriptive of the trait, rather than just repeating the name.

CO_350:0000009 Groat content

CO_350:0000009 Groat content
Def'n: Groat content

It's not clear what this means. The definition should be more descriptive of the trait, rather than just repeating the name.
Content of what?

CO_350:0000213 Canopy senescence

Missing def'n

CO_350:0000036 Beta-glucan content

CO_350:0000036 Beta-glucan content
Def'n: Amount of beta-glucan present in the groat expressed as a percentage of the entire groat.

Revise name: Groat Beta-glucan content

It's not clear what this means- is it based on the weight of an individual groat?

CO_350:0000042 Dietary fiber content

CO_350:0000042 Dietary fiber content
Def'n: Dietary fiber content

It's not clear what this means. The definition should be more descriptive of the trait, rather than just repeating the name.
Dietary fiber content of what?

CO_350:0000222 Caonpy temperature depression

Typo in term name
https://cropontology.org/term/CO_350:0000223

Create: test trait

Submitter

Name	Marie-Angélique Laporte
Program	Alliance of Bioversity International and CIAT

Creation Request

Trait Name	test trait
Definition	trait description goes there
Trait Class	Abiotic Stress
Measurement Method	method description goes there
Measurement Type	Unit
Measurement Unit	kg

CO_350:0000087 Crown rust infection type

Def'n: A qualitative analysis of the type of crown rust symptoms that are exhibited.

It's not clear what this means. Is this referring to the plant response?

CO_350:0000060 Tocopherol concentration

CO_350:0000060 Tocopherol concentration
It's not clear what this means. The definition should be more descriptive of the trait, rather than just repeating the name.
Tocopherol concentration of what?
Please provide the entity in the name and definition and the ChEBI ID for the compound

CO_350:0000090 Crown rust severity

CO_350:0000090 Crown rust severity
Def'n: Crown rust severity
It's not clear how this is different from CO_350:0000087 Crown rust infection type

The definition should be more descriptive of the trait, rather than just repeating the name.

CO_350:0000018 Maturity time

Def'n: The time when maturity occurs.

It's not clear what this means. The definition should be more descriptive of the trait, rather than just repeating the name.
Maturity time of the plant or the grains?

Duplicated trait- Flowering time

There are two traits for flowering time, with same name and definition:

• CO_350:0000238 Flowering time: The time when flowering occurs.

• CO_350:0000680 Flowering time: The time when flowering occurs.

CO_350:0000078 Thousand grain weight

Def'n: Thousand grain weight

The definition should be more descriptive of the trait, rather than just repeating the name.

Create: test trait

Submitter

Name	Laurel Cooper
Program	Oregon State University

Creation Request

Trait Name	test trait
Definition	blah, blah
Trait Class	Abiotic Stress
Measurement Method	measurement
Measurement Type	Unit
Measurement Unit	g

Create: New test

Submitter

Name	Laurel Cooper
Program	Oregon State University

Creation Request

Trait Name	New test
Definition	definition
Trait Class	Abiotic Stress
Measurement Method	visual
Measurement Type	Unit
Measurement Unit	g

CO_350:0000057 Tocotrienol concentration

CO_350:0000057 Tocotrienol concentration
Def'n: Tocotrienol concentration

It's not clear what this means. The definition should be more descriptive of the trait, rather than just repeating the name.
Tocotrienol content of what?

Please provide the entity in the name and definition and the ChEBI ID for the compound

T3 Entries Removed From Trait Dictionary

It looks like the latest commit b68fa0f made by @marieALaporte removed the T3 variables from the trait dictionary - the change removed 329 lines from the file and added back only 229.

CO_350:0000208 Canopy green persistence

Missing def'n

CO_350:0000033 Avenanthramide content

CO_350:0000033 Avenanthramide content
Def'n: Avenanthramide content
It's not clear what this is or what part of the plant is being measured.
Please provide the entity in the name and definition and the ChEBI ID for the compound